View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20115_low_19 (Length: 241)

Name: NF20115_low_19
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20115_low_19
NF20115_low_19
[»] chr6 (16 HSPs)
chr6 (1-226)||(33643693-33643918)
chr6 (1-218)||(33263411-33263628)
chr6 (1-218)||(33401394-33401611)
chr6 (1-147)||(33058337-33058483)
chr6 (1-218)||(9167540-9167751)
chr6 (1-218)||(33286319-33286536)
chr6 (1-208)||(33305257-33305464)
chr6 (1-218)||(33272573-33272790)
chr6 (1-153)||(31561970-31562122)
chr6 (1-218)||(33388815-33389032)
chr6 (1-67)||(33359489-33359555)
chr6 (1-143)||(33410713-33410855)
chr6 (175-210)||(31561898-31561933)
chr6 (175-218)||(33410917-33410960)
chr6 (175-217)||(33359657-33359699)
chr6 (181-217)||(33058520-33058556)
[»] chr2 (2 HSPs)
chr2 (1-147)||(17439990-17440136)
chr2 (175-209)||(17439925-17439959)
[»] chr4 (6 HSPs)
chr4 (48-101)||(31484024-31484077)
chr4 (1-141)||(31503299-31503439)
chr4 (61-143)||(31498063-31498145)
chr4 (41-125)||(31149173-31149257)
chr4 (1-101)||(31158007-31158107)
chr4 (42-141)||(31527233-31527332)
[»] scaffold1408 (2 HSPs)
scaffold1408 (175-218)||(1600-1643)
scaffold1408 (1-101)||(1402-1502)
[»] scaffold0428 (2 HSPs)
scaffold0428 (175-218)||(7346-7389)
scaffold0428 (1-101)||(7148-7248)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33643918 - 33643693
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33643918 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 33643819  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33643818 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 33643719  T
Q  201 ttttgacaagtattcaacttcctctt 226  Q
    ||||||||||||||||||||||||||    
T  33643718 ttttgacaagtattcaacttcctctt 33643693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 33263411 - 33263628
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||||||||||||||| |||||||||| |||  ||||| |||||||||||||| |||||| |||||| ||||||||||| || |  ||||||    
T  33263411 accttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggat 33263510  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    |   || ||| ||||||||||| ||||  ||||||||||||||||||||| || |||||| |   ||| || | ||||| ||||||||||||||||||||    
T  33263511 attcatcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcat 33263610  T
Q  201 ttttgacaagtattcaac 218  Q
    ||||||||| | ||||||    
T  33263611 ttttgacaattgttcaac 33263628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 33401394 - 33401611
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||||||||||||||| ||||||||||   |  ||||| |||||||||||||| |||||| |||||| ||| ||||||| || |||||||||    
T  33401394 accttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttgttggcaaatacttgaaaggat 33401493  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    |   |||||| ||||||||||||||||| ||||||||| || ||| || | || |||||| ||||  |||||| ||||| || | |||||||||||||||    
T  33401494 attcatgccaatcaacatatcttaattcgtttgaaagaaaatttgagcctcctgagatattccaattgcacttgatgatgagaagtctaagattactcat 33401593  T
Q  201 ttttgacaagtattcaac 218  Q
    |||||| |||| ||||||    
T  33401594 ttttgataagtgttcaac 33401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 33058337 - 33058483
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||| |||||| |||||||||||||||||| || || ||||||    
T  33058337 accttcttgtttttccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggat 33058436  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttggg 147  Q
    |  ||  ||||| |||| |||||||||  || |||||||| ||||||    
T  33058437 atctaaaccagtgaacaaatcttaatttgttcgaaagacagcttggg 33058483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 9167540 - 9167751
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    ||||| |||||||||||||||||| |||||||||||   ||||||| || || |||||||| |||||  |||||| | ||||||||| || |||||||||    
T  9167540 acctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggat 9167639  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    |   || ||| |||| |||||||||||| || ||||||| || |||      |||||||| ||||||| | || ||||| |||||||||||| |||||||    
T  9167640 atcgataccactcaagatatcttaattcgttcgaaagactacatgg------taagatattccaaccgtatttgatgatgagcaatctaagactactcat 9167733  T
Q  201 ttttgacaagtattcaac 218  Q
    ||||||||||| ||||||    
T  9167734 ttttgacaagtgttcaac 9167751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 33286319 - 33286536
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||| ||| ||||||||||| ||||||||||  | | ||||| |||||||||||||| |||||| |||||||||||||||||| |  |||||||||    
T  33286319 accttcttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggat 33286418  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    |   |  ||| | ||||||||||||||  ||||||||||    | ||||| |  |||||| |  ||| ||| | ||||| ||||||||||||||||||||    
T  33286419 atccagtccactgaacatatcttaatttgtttgaaagactcaataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcat 33286518  T
Q  201 ttttgacaagtattcaac 218  Q
    ||||||||||| ||||||    
T  33286519 ttttgacaagtgttcaac 33286536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33305257 - 33305464
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||| |||||||||||  ||| |||||  |||| |||| |||||||||||||| |||||| |||||||||||||||||| || | |||||||    
T  33305257 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 33305356  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    |   |||||| ||||||||| ||||||  ||||||| ||  | ||| ||| || ||||   || |||| |||| | ||| || |||||||||||| ||||    
T  33305357 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 33305456  T
Q  201 ttttgaca 208  Q
    ||||||||    
T  33305457 ttttgaca 33305464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 33272573 - 33272790
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||||||||||||||| | |||| ||| ||| |||||| |||||||| ||| | |||||| |||||| ||| ||| | |||| |||||||||    
T  33272573 accttcttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggat 33272672  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    |   || ||| ||||||||||||||| | |||||||| |    | | ||  ||  ||||| || ||||||||| || || ||||||||||||||||||||    
T  33272673 atccatcccactcaacatatcttaatgcatttgaaaggctcgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcat 33272772  T
Q  201 ttttgacaagtattcaac 218  Q
    ||||| ||||| ||||||    
T  33272773 ttttgccaagtgttcaac 33272790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31562122 - 31561970
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||| ||||||||||  ||||| ||||  ||  ||||| |||||||||||||| || ||| |||||| ||||||||||| || |||||||||    
T  31562122 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 31562023  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttct 153  Q
    |   | |||| ||||||||||||||||  || ||||||||| | |||||||||    
T  31562022 attcaagccactcaacatatcttaatttgttcgaaagacaattcgggctttct 31561970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 33388815 - 33389032
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    ||||||||||| |||||||||||| | |||| ||| | | |||||| ||| |||||||| | | |||| |||||| ||||||||||| || |||||||||    
T  33388815 accttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggat 33388914  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 200  Q
    |   || ||| |||||||||||||||   ||||||||||    ||||||   |  ||||| |  ||| ||||| ||||| || |||||||||||||||||    
T  33388915 aataattccactcaacatatcttaatgtgtttgaaagactcgatgggctacttgggatattcggaccccacttgatgatgagtaatctaagattactcat 33389014  T
Q  201 ttttgacaagtattcaac 218  Q
    ||||||||| | ||||||    
T  33389015 ttttgacaactgttcaac 33389032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33359489 - 33359555
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgg 67  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||| |||||    
T  33359489 accttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattgg 33359555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33410713 - 33410855
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    ||||||||| |||||||||||||| | | | |||| |||||||||| |||||| ||||||| ||| || |||||| || |||||||   |  ||||||||    
T  33410713 accttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaattcccagaaaggat 33410812  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaact 143  Q
    |    | |||||||| ||| |||||||  ||||||||||||||    
T  33410813 aatgctcccagtcaaaataccttaatttgtttgaaagacaact 33410855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 31561933 - 31561898
Alignment:
Q  175 atgatcagcaatctaagattactcatttttgacaag 210  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31561933 atgatgagcaatctaagattactcatttttgacaag 31561898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 33410917 - 33410960
Alignment:
Q  175 atgatcagcaatctaagattactcatttttgacaagtattcaac 218  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||    
T  33410917 atgatgagcaatctaagattactcatttttgaaaagtgttcaac 33410960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 33359657 - 33359699
Alignment:
Q  175 atgatcagcaatctaagattactcatttttgacaagtattcaa 217  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    
T  33359657 atgatgagcactctaagattactcatttttgacaagtgttcaa 33359699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 33058520 - 33058556
Alignment:
Q  181 agcaatctaagattactcatttttgacaagtattcaa 217  Q
    |||||||| |||||||||||||||||||||| |||||    
T  33058520 agcaatctgagattactcatttttgacaagtgttcaa 33058556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 17440136 - 17439990
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||||||||||| | | |||||||||||   | ||| | ||||||||| |||| |||||| |||||| ||| ||||||| || |||||||||    
T  17440136 accttcttgtttttccataggtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggat 17440037  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaacttggg 147  Q
    |  || |||| ||||||||||||||||  || |||||||||||||||    
T  17440036 atttaggccactcaacatatcttaatttgttcgaaagacaacttggg 17439990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 17439959 - 17439925
Alignment:
Q  175 atgatcagcaatctaagattactcatttttgacaa 209  Q
    ||||| |||||||||||||||||||||||||||||    
T  17439959 atgatgagcaatctaagattactcatttttgacaa 17439925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 31484077 - 31484024
Alignment:
Q  48 caattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggata 101  Q
    |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||    
T  31484077 caattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggata 31484024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31503439 - 31503299
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||| || ||||| ||||   ||| ||||  ||||||||| ||| || ||||||||||| ||||||||| |||| |||||| || |||||||||    
T  31503439 accttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttgacggcaaatacttgaaaggat 31503340  T
Q  101 acatatgccagtcaacatatcttaattcctttgaaagacaa 141  Q
    |   |  ||| ||||||||||||||||| || |||||||||    
T  31503339 attcactccattcaacatatcttaattcgttagaaagacaa 31503299  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 31498145 - 31498063
Alignment:
Q  61 tgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaact 143  Q
    ||||| ||||||||||||||||| ||| |||||||||||||   |||||| |||| |||||||||||  || |||||||||||    
T  31498145 tgattaggctgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaact 31498063  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 31149173 - 31149257
Alignment:
Q  41 tcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaa 125  Q
    |||||| |||||| ||||||||||| ||| ||||| ||||||||||| || ||||||||||  ||| ||| || |||||||||||    
T  31149173 tcaagatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatatctattccactcgacatatcttaa 31149257  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31158007 - 31158107
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||| ||||||||||||| | | | |||| | | ||| || |||||| |||||||||||||||||||||  || ||||||| || |||||||||    
T  31158007 accttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggcaaatacttgaaaggat 31158106  T
Q  101 a 101  Q
    |    
T  31158107 a 31158107  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 31527233 - 31527332
Alignment:
Q  42 caagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaa 141  Q
    ||||| ||| || |||||||| | ||| |||||| ||||||||||| |||||||||||||     |||| ||||||||||||||||| || |||| ||||    
T  31527233 caagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaattcattagaaatacaa 31527332  T

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Target: scaffold1408 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 1600 - 1643
Alignment:
Q  175 atgatcagcaatctaagattactcatttttgacaagtattcaac 218  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||    
T  1600 atgattagcaatctaagattactcattgttgacaagaattcaac 1643  T

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Target: scaffold1408; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1402 - 1502
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||||||||||||||| |||||  |||  ||  ||| | |||||||||||||| |   || |||||| ||||||||| | || |||||||||    
T  1402 accttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggat 1501  T
Q  101 a 101  Q
    |    
T  1502 a 1502  T

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Target: scaffold0428 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 7346 - 7389
Alignment:
Q  175 atgatcagcaatctaagattactcatttttgacaagtattcaac 218  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||    
T  7346 atgattagcaatctaagattactcattgttgacaagaattcaac 7389  T

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Target: scaffold0428; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7148 - 7248
Alignment:
Q  1 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 100  Q
    |||||||||||||||||||||||| |||||  |||  ||  ||| | |||||||||||||| |   || |||||| ||||||||| | || |||||||||    
T  7148 accttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggat 7247  T
Q  101 a 101  Q
    |    
T  7248 a 7248  T

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