View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20115_low_22 (Length: 222)
Name: NF20115_low_22
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 33357584 - 33357391
Alignment:
| Q |
18 |
caagtttgcctacgtggagatgaacatatttaactcaaa--caataataaagagtagttgctccaggtaggcaataagagaggtaagaatgacatgaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33357584 |
caagtttgcctacgtggagatgaacatatttaactcaaaaacaataataaagagtagttgccccaggtaggcaataagagaggtaagaatgacatgaata |
33357485 |
T |
|
| Q |
116 |
aacctaactcccaactataatccaaacccatgctataatcaacattgatatcaaacctcccaccgatttaattaaatgaaatgctacctatgct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33357484 |
aacctaactcccaactataatccaaacccatgctataatcaacattgatatcaaacctcccaccgatttaattaaatgaaatgctacctatgct |
33357391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University