View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_23 (Length: 221)
Name: NF20115_low_23
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_23 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10371943 - 10372163
Alignment:
| Q |
1 |
agatcagtttctattctctgctcttaacattttgcttccactttctgttttctcaaaatcctgattggaatcacagttgatgagagaattgtattaggca |
100 |
Q |
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| T |
10371943 |
agatcagtttctattctctgctcttaacattttgcttccactttctgttttctcaaaatcctgattggaatcacagttgatgagagaattgtattaggca |
10372042 |
T |
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| Q |
101 |
tttaaaataaaataacaggataagtattaactatttgaccacattatttattattttagaaacaacaacaactcacattcttccactaaaagctacaaat |
200 |
Q |
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| T |
10372043 |
tttaaaatgaaataacaggataagtattaactatttgaccacattatttattattttagaaacaacaacaactcacattcttccactaaaagctacaaat |
10372142 |
T |
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| Q |
201 |
aaagaatattacaaaccctac |
221 |
Q |
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|||||||||||||||||||| |
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| T |
10372143 |
taagaatattacaaaccctac |
10372163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 10130918 - 10130852
Alignment:
| Q |
155 |
tttagaaacaacaacaactcacattcttccactaaaagctacaaataaagaatattacaaaccctac |
221 |
Q |
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| T |
10130918 |
tttagaaacaataacaactcacattcttccactaaaagctacaaattaagaatattacaaaccctac |
10130852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 8408164 - 8408119
Alignment:
| Q |
155 |
tttagaaacaacaacaactcacattcttccactaaaagctacaaat |
200 |
Q |
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| T |
8408164 |
tttagaaacaataacaacacacattcttccacttaaagctacaaat |
8408119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 21262359 - 21262404
Alignment:
| Q |
155 |
tttagaaacaacaacaactcacattcttccactaaaagctacaaat |
200 |
Q |
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| T |
21262359 |
tttagaaacaataacaacacacattcttccacttaaagctacaaat |
21262404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 37569941 - 37569896
Alignment:
| Q |
155 |
tttagaaacaacaacaactcacattcttccactaaaagctacaaat |
200 |
Q |
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| T |
37569941 |
tttagaaacaataacaacacacattcttccacttaaagctacaaat |
37569896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 37503172 - 37503217
Alignment:
| Q |
155 |
tttagaaacaacaacaactcacattcttccactaaaagctacaaat |
200 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
37503172 |
tttagaaacaataacaacacacattcttccacttaaagctacaaat |
37503217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 32041373 - 32041328
Alignment:
| Q |
155 |
tttagaaacaacaacaactcacattcttccactaaaagctacaaat |
200 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
32041373 |
tttagaaacaataacaacacacattcttccacttaaagctacaaat |
32041328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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