View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_24 (Length: 216)
Name: NF20115_low_24
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_24 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 5654225 - 5654027
Alignment:
| Q |
18 |
gtgcatgtctatcatattgcaattaccacagggttgtgatggttctattcttgtatcttcaacgccacataatagagcagagagggatcaccctgataat |
117 |
Q |
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| T |
5654225 |
gtgcatgtctatcatattgcaattaccacagggttgtgatggttctattcttgtatcttcaacgccacataatagagcagagagggatcaccctgataat |
5654126 |
T |
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| Q |
118 |
ctttcattggctggagatggatttgacacagttatacaagccaaagcagctgtggatgctgttcctctttgccaaaataaagtttcttgtgctgatatt |
216 |
Q |
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| T |
5654125 |
ctttcattggctggagatggatttgacacagttatacaagccaaagcagctgtggacgctgttcctctttgccagaataaagtttcttgtgctgatatt |
5654027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 39800772 - 39800886
Alignment:
| Q |
102 |
ggatcaccctgataatctttcattggctggagatggatttgacacagttatacaagccaaagcagctgtggatgctgttcctctttgccaaaataaagtt |
201 |
Q |
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|||||| ||||| ||| | ||||||||||| ||||| ||||||||||| || |||| ||||| || | ||||||||||| | ||| ||| |||||| |
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| T |
39800772 |
ggatcatcctgaaaatttgtcattggctggtgatggttttgacacagtgattaaagcaaaagctgcattagatgctgttccacagtgcagaaacaaagtt |
39800871 |
T |
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| Q |
202 |
tcttgtgctgatatt |
216 |
Q |
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| T |
39800872 |
tcttgtgctgatatt |
39800886 |
T |
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