View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20115_low_3 (Length: 443)

Name: NF20115_low_3
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20115_low_3
NF20115_low_3
[»] chr5 (9 HSPs)
chr5 (10-140)||(9617526-9617655)
chr5 (258-424)||(9617368-9617532)
chr5 (334-424)||(17391601-17391691)
chr5 (334-424)||(17382825-17382914)
chr5 (337-424)||(1348782-1348869)
chr5 (336-424)||(19970551-19970639)
chr5 (345-424)||(20110869-20110948)
chr5 (334-424)||(17376447-17376537)
chr5 (379-420)||(20049107-20049148)
[»] chr3 (1 HSPs)
chr3 (338-417)||(32243151-32243230)
[»] chr6 (3 HSPs)
chr6 (338-416)||(16259556-16259634)
chr6 (338-416)||(16229247-16229325)
chr6 (334-419)||(31114506-31114591)
[»] scaffold0009 (2 HSPs)
scaffold0009 (370-418)||(21471-21519)
scaffold0009 (357-420)||(39743-39806)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 9617655 - 9617526
Alignment:
Q  10 agatgaacagagcaatgagtcatagtggctacacgtaaactccacaaatggagaatcacaagtgtttcgcaggaggagaaaatggtaggcggcaaagggg 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9617655 agatgaacagaacaatgagtcatagtggctacacgtaaactcca-aaatggagaatcacaagtgtttcgcaggaggagaaaatggtaggcggcaaagggg 9617557  T
Q  110 ggaagcctaatactaacgttagacggagatc 140  Q
     ||||||||||||||||| ||||||||||||    
T  9617556 agaagcctaatactaacgctagacggagatc 9617526  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 258 - 424
Target Start/End: Complemental strand, 9617532 - 9617368
Alignment:
Q  258 ggagatcatgactgcgttgattaatcggtagaagtcgtctgcgttctccacatcggcatcttggaagtcgagaactgagagtgagtggcataatgggacc 357  Q
    ||||||||||||||||||||||||||| |||||||| | ||  ||||| ||||||  |   ||||||||||||||| ||||||||||| |||||||||||    
T  9617532 ggagatcatgactgcgttgattaatcgatagaagtcatgtg--ttctcgacatcgttactgtggaagtcgagaacttagagtgagtgggataatgggacc 9617435  T
Q  358 caccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 424  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9617434 caccttttcgagagaacgatagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 9617368  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 17391691 - 17391601
Alignment:
Q  334 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 424  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| ||||| ||||||| ||||  ||| || |||||||||||||||||||    
T  17391691 gagagtgagtggcataatgagacccatcttttcgaaagaacggtggttctaaaagcgtctttgcatggaagcaaagagagaatgtgagtta 17391601  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 17382914 - 17382825
Alignment:
Q  334 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 424  Q
    ||||||||||||||||||| |||||| |||||||| |||||  | ||||| ||||||| ||||  ||| ||||||||||||||||||||||    
T  17382914 gagagtgagtggcataatgagacccatcttttcgaaagaac-atggttctaaaagcgtgtttgcatggaagaaaagagagaatgtgagtta 17382825  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 424
Target Start/End: Original strand, 1348782 - 1348869
Alignment:
Q  337 agtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 424  Q
    |||| |||| ||||||||| ||| || || || |||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  1348782 agtgtgtggaataatgggaaccatctcttagaaagaatggtagttctgaaagcgtctttgaatgtgagaaaagagataatgtgagtta 1348869  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 19970551 - 19970639
Alignment:
Q  336 gagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 424  Q
    |||||||| ||| |||| ||||||| | || || || ||||| ||||||||||||| | ||| ||| ||||||||||||||||||||||    
T  19970551 gagtgagtagcacaatgagacccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtgagtta 19970639  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 20110948 - 20110869
Alignment:
Q  345 gcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 424  Q
    |||||||| ||||||  | || ||||||||||| ||| ||||||||| ||||| ||| ||||||||||  ||||||||||    
T  20110948 gcataatgagacccatttctttgagagaacggtggttttgaaagcgtctttgaatggaagaaaagagacgatgtgagtta 20110869  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 17376537 - 17376447
Alignment:
Q  334 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 424  Q
    ||||||||||||||||||| || ||| |||||||| ||||| |||  ||| ||||||| |||   ||| || ||||||||||| |||||||    
T  17376537 gagagtgagtggcataatgagatccatcttttcgaaagaactgtaaatctaaaagcgtctttacatggaagtaaagagagaatatgagtta 17376447  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 20049148 - 20049107
Alignment:
Q  379 gttctgaaagcgtatttgagtgggagaaaagagagaatgtga 420  Q
    ||||||||| |||||||||  |||||||||||||||||||||    
T  20049148 gttctgaaaacgtatttgatagggagaaaagagagaatgtga 20049107  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 32243151 - 32243230
Alignment:
Q  338 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatg 417  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||| ||||| ||| |||||| ||||||||    
T  32243151 gtgagtggcgtaatgggacccacctcttcgaaagaatggtagttctgaaagcgtctttgactggaagaaaaaagagaatg 32243230  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 16259556 - 16259634
Alignment:
Q  338 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaat 416  Q
    ||||||| ||||||| ||||||||| ||||| |||| ||||||||||||||||| ||||| ||| ||||||||||||||    
T  16259556 gtgagtgacataatgagacccacctcttcgaaagaatggtagttctgaaagcgtctttgattggaagaaaagagagaat 16259634  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 16229247 - 16229325
Alignment:
Q  338 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaat 416  Q
    ||||||| ||||||| ||||||||| ||||| |||| ||||||||||||||| | ||||| ||| ||||||||||||||    
T  16229247 gtgagtgacataatgagacccacctcttcgaaagaatggtagttctgaaagcctctttgattggaagaaaagagagaat 16229325  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 31114591 - 31114506
Alignment:
Q  334 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtg 419  Q
    |||||||||||||||||||||||||| || || || || ||  | ||||| ||||| ||||||| |||||||||||| ||||||||    
T  31114591 gagagtgagtggcataatgggacccaactcttagaaaggacattggttctaaaagcttatttgattgggagaaaagacagaatgtg 31114506  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 21519 - 21471
Alignment:
Q  370 agaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgt 418  Q
    |||||||||||||||||||| |||||||  || ||||||||||||||||    
T  21519 agaacggtagttctgaaagcatatttgatcggaagaaaagagagaatgt 21471  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 39806 - 39743
Alignment:
Q  357 ccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtga 420  Q
    |||||| || || |||| |||||||||||||||||||||||  || ||||||||||| ||||||    
T  39806 ccacctcttggaaagaatggtagttctgaaagcgtatttgatcggaagaaaagagagtatgtga 39743  T

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