View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_4 (Length: 443)
Name: NF20115_low_4
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 34 - 424
Target Start/End: Complemental strand, 6679384 - 6678994
Alignment:
| Q |
34 |
attgatacctttgggatgcttctcggtagatgcacaccaatgaagctcttcaaggacatttccagatgctccaaacatatagtgatggtgtttgagagac |
133 |
Q |
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| T |
6679384 |
attgatacctctgggattcttcacggcagatgcacaccaatgaagctctccaaggacatttctagaagctccaaacatgtaatgatggtgtttgagagac |
6679285 |
T |
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| Q |
134 |
gaaagtcaccaatgccatcaccggtcttcagctcaaattgtagaattgatgtaagatcatgcaccttgtctttgatcattttcactgaatgaagaaattg |
233 |
Q |
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| T |
6679284 |
gaaagccaccaatgccatcaccggtcttcaactcaaattgtagaattgatgtaagatcatgcaccttgtctttgatcattttcactgaatgaagaaattg |
6679185 |
T |
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| Q |
234 |
tgatggtggtatctttaggcactctagtgtattgagacttgagcaacttgttaaaggaaggaaagctaagaaaataaaaatgcttgtttatgcttgctgg |
333 |
Q |
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| T |
6679184 |
tgatggtggtatctttaggcactctagtgtattgagacttgagcaacttgttaaaggaaggaaagctaagaacataaaaatgcttgtttatgcttgctga |
6679085 |
T |
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| Q |
334 |
tatgtttgacattgtgttcttcattttgtaaaatccaagaaaatgttcttatgcatgttttatggtttccttaggttgttttatggcttgt |
424 |
Q |
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| T |
6679084 |
tatgtttgacattgtgttcttcattttgtaaaagccaagaaaatgttcttatgcatgttttatggcttctataggttgttttatggcttgt |
6678994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 6679433 - 6679720
Alignment:
| Q |
9 |
ataaaattagtgtaaacttttaaatattgatacctttgggatgcttctcggtagatgcacaccaatgaagctcttcaaggacatttccagatgctccaaa |
108 |
Q |
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| T |
6679433 |
ataaaattagtgtaaacttttaaatattgatacctctgggattcttcacggcagatgcacgccaatgaagctcttcaaggacatttctagaagctccaaa |
6679532 |
T |
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| Q |
109 |
catatagtgatggtgtttgagagacgaaagtcaccaatgccatcaccggtcttcagctcaaattgtagaattgatgtaagatcatgcaccttgtctttga |
208 |
Q |
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| T |
6679533 |
catgtagcgttggtgtttgagagacgaaagccaccaatg---------gtcttcaactcaaattgtagaattgatgtaagat-atgcaccttgtctttga |
6679622 |
T |
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| Q |
209 |
tcattttcactgaatgaagaaattgtgatggtggtatctttaggcactctagtgtattgagacttgagcaacttgttaaaggaaggaaagctaagaaa |
306 |
Q |
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| T |
6679623 |
tcattttcactgaatgaagaaattgtgatggtggtatctttagacactctagtgtattgagacttgagcaacttgttaaaggaaggaaagctaagaaa |
6679720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 294 - 424
Target Start/End: Original strand, 6679742 - 6679875
Alignment:
| Q |
294 |
gaaagctaagaaaataaaaatgcttgtt--tatgcttgctggtatgtttgacattgtgttcttcattttgtaaaatccaagaaaatgttcttatgcatgt |
391 |
Q |
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| T |
6679742 |
gaaagctaaaaaaataaaaatgcttgttcttatgtttgctggtatgtttgacattgtgttcttcattttataaaagccaagaaaatgttcttatgcatgt |
6679841 |
T |
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| Q |
392 |
tttatggtttccttaggttg-ttttatggcttgt |
424 |
Q |
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| T |
6679842 |
tttatggcttctctaggttgtttttatggcttgt |
6679875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 6848960 - 6848777
Alignment:
| Q |
11 |
aaaattagtgtaaacttttaaatattgatacctttgggatgcttctcggtagatgcacaccaatgaagctcttcaa-ggacatttccagatgctccaaac |
109 |
Q |
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| T |
6848960 |
aaaaatagtgtaaaattttaaacattgatacctttgagatttttcatagcagatgcacacccttgaagctcttcaacggaaatttctagaagctccaaac |
6848861 |
T |
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| Q |
110 |
atatagtgatggtgtttgagagacgaaagtcaccaatgccatcaccggtcttcagctcaaattgtagaattgatgtaagatcat |
193 |
Q |
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| T |
6848860 |
atgtagcgatggtgtttgagaggcgaaagccgccaatgccatcaacaatcttcaactcaaattgtagaattgatgtaagatcat |
6848777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 424
Target Start/End: Complemental strand, 6848775 - 6848608
Alignment:
| Q |
253 |
cactctagtgtattgagacttgagcaacttgttaaaggaaggaaagctaagaaaataaaaatgcttgtttatgcttgctggtatgtttgacattgtgttc |
352 |
Q |
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| T |
6848775 |
cactctagtctactgagactagagcaaccagttaaaggaaggaaagccaagaaaataaaaatgatagt----gcttggtggtatctttggcatcgtgctc |
6848680 |
T |
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| Q |
353 |
ttcattttgtaaaatccaagaaaatgttcttatgcatgttttatggtttccttaggttgttttatggcttgt |
424 |
Q |
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| T |
6848679 |
ttcattttgtaaaagccaagaccatgttcttaagcttgttttatggcttcttttggttgttttatggcttgt |
6848608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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