View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20115_low_5 (Length: 411)
Name: NF20115_low_5
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 1196260 - 1196076
Alignment:
| Q |
15 |
gactccagggcataatacttcagttgtaaatcgttacagagcaacgacatgggcaccctttctactttcaggtcttcttgaagctgctcgagacatagtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196260 |
gactccagggcataatacttcagttgtaaatcagtacacagcaacgaaatgggcaccctttctactttcaggtcttcttgaagctgctcgagacatagtt |
1196161 |
T |
|
| Q |
115 |
gaatataaccttgaatcaatctttccaagtcttcaatcgtccgagaattactaccttcgaattgaggtatgcctgcacctcgttg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196160 |
gaatataaccttgaatcaatctttccaagtcttcaatcgtccgagaattactaccttcgaattgaggtatgcctgcacctcgttg |
1196076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 252 - 396
Target Start/End: Complemental strand, 1195967 - 1195828
Alignment:
| Q |
252 |
atctaaaatcattatttttaatctttaataaacgtaactgtccataatgcgcaggagtatagcttggataaaacccttactgccgataatgctaccatag |
351 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
1195967 |
atctaaaatcattatttttaatcttgaataaac-----tgtccataatgtgtaggagtatagcttggatcaaacccttactgctgataatgctaccatag |
1195873 |
T |
|
| Q |
352 |
aaaacatggaaaaacttataaaggcaggagaggacttgttggaac |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1195872 |
aaaacatggaaaaacttataaaggcaggagaggacttgttggaac |
1195828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 1196056 - 1196006
Alignment:
| Q |
200 |
cctttaattaatttataacgaatgagttccaaataacttcttctattttta |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
1196056 |
cctttaattaatttataacgaatgagtttcaaataacttcttctactttta |
1196006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 1253105 - 1253036
Alignment:
| Q |
114 |
tgaatataaccttgaatcaatctttccaagtcttcaatcgtccgagaattactaccttcgaattgaggta |
183 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| || || || || |||||||||||||||||||||||| |
|
|
| T |
1253105 |
tgaatatcatcttgaatcaatatttccaagtcatcggtcttcagacaattactaccttcgaattgaggta |
1253036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 1241938 - 1241886
Alignment:
| Q |
343 |
ctaccatagaaaacatggaaaaacttataaaggcaggagaggacttgttggaa |
395 |
Q |
| |
|
|||||| ||||||| |||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
1241938 |
ctaccaaagaaaacctggacaaacttgtaaaggcaggagaggacttattggaa |
1241886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 1242406 - 1242337
Alignment:
| Q |
114 |
tgaatataaccttgaatcaatctttccaagtcttcaatcgtccgagaattactaccttcgaattgaggta |
183 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| | || || || |||||||||||||||||||||||| |
|
|
| T |
1242406 |
tgaatatcatcttgaatcaatatttccaagtcaccggtcttcagacaattactaccttcgaattgaggta |
1242337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 1220321 - 1220269
Alignment:
| Q |
336 |
gataatgctaccatagaaaacatggaaaaacttataaaggcaggagaggactt |
388 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || ||| |||||||| ||||||| |
|
|
| T |
1220321 |
gataatgttaccatagaaagcatggaaaatctgatacaggcaggaaaggactt |
1220269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University