View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_6 (Length: 388)
Name: NF20115_low_6
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 9424051 - 9424397
Alignment:
| Q |
21 |
gaccctaatattcaacccaacaattgctcctctctccctcacttcttcttatacagcaacaattttacccaaaaagatactaattcatacgaatacagct |
120 |
Q |
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| T |
9424051 |
gaccctaatattcaacccaacaattgctcctctctccctcgcttcttcttataccgcaccaatttcacttatta---tactaattcatacgaatacagct |
9424147 |
T |
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| Q |
121 |
tacttcgatcaagttcttacgatggaattgatttatcttccacctcttattatttcgatggaattgatttatctaggcctgtaatttacatgaactgtac |
220 |
Q |
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| T |
9424148 |
tacttcgatcaagttcttacgatggaattgatttatcttccacctcttatgttttcgatggaattgatttatctaggcctgtaatttacatgaactgtac |
9424247 |
T |
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| Q |
221 |
aagtccacctagtaacaacgtgaatatgtattatacggatacatcttcttgcatgggtcaacacaacatatatgctattgttggggacccacaacttgga |
320 |
Q |
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| T |
9424248 |
aagtccacctagtaacaatgtgaatatgtattatacggatacatcttcttgcatgggtcaacacaacatatatgctattgttggggacccacaacttgga |
9424347 |
T |
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| Q |
321 |
atattggagcctcaatgtcgtgttaagcttgttactctcacatccttctg |
370 |
Q |
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| T |
9424348 |
atattggagcctcaatgtcgtgttaagcttgttactctcacatccttctg |
9424397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 169 - 370
Target Start/End: Original strand, 9444408 - 9444606
Alignment:
| Q |
169 |
attatttcgatggaattgatttatctaggcctgtaatttacatgaactgtacaagtccacctagtaacaacgtgaatatgtattatacggatacatcttc |
268 |
Q |
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| T |
9444408 |
attattccgatagaattgatttatccaggcctgtaatttacctgaagtgtacaagtccacctagtaacgttgtggataaatattatacggatacaacttc |
9444507 |
T |
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| Q |
269 |
ttgcatgggtcaacacaacatatatgctattgttggggacccacaacttggaatattggagcctcaatgtcgtgttaagcttgttactctcacatccttc |
368 |
Q |
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| T |
9444508 |
atgcctggatgaacacac---atatgttattgtcggggacccacaacttggaatattgcagcctcaatgccgtgttaagcttgttactctcacatccttc |
9444604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 186 - 366
Target Start/End: Complemental strand, 9417804 - 9417627
Alignment:
| Q |
186 |
gatttatctaggcctgtaatttacatgaactgtacaagtccacctagtaacaacgtgaatatgtattatacggatacatcttcttgcatgggtcaacaca |
285 |
Q |
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| T |
9417804 |
gatttatcttggcctgtaatttacctgaagtgtacaagtccacctagtaatgatgtgaatatgtattatgcggatacagcttcatgcctggatcaaca-a |
9417706 |
T |
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| Q |
286 |
acatatatgctattgttggggacccacaacttggaatattggagcctcaatgtcgtgttaagcttgttactctcacatcct |
366 |
Q |
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| T |
9417705 |
ac--atatgttattgttggggatccacactttggaatattgcagcctcaatgccgtgttgagcttgttactctcacatcct |
9417627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 9444284 - 9444393
Alignment:
| Q |
21 |
gaccctaatattcaacccaacaattgctcctctctccctcacttcttcttatacagcaacaattttacccaaaaagatactaattcatacgaatacagct |
120 |
Q |
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||||| || |||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9444284 |
gacccaaacattcaacctaccaactgctcctctctccctcacttcttcttatacagaaacaattttacccaaaaagatactaattcatacaaatacagct |
9444383 |
T |
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| Q |
121 |
tacttcgatc |
130 |
Q |
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| T |
9444384 |
tccgtcgatc |
9444393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 9417969 - 9417905
Alignment:
| Q |
21 |
gaccctaatattcaacccaacaattgctcctctctccctcacttcttcttatacagcaacaattt |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||| |
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| T |
9417969 |
gaccctaatattcaacccaacaattgctcctctctccctcgcttcttcatataccgcaccaattt |
9417905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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