View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20115_low_7 (Length: 361)
Name: NF20115_low_7
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 655521 - 655863
Alignment:
| Q |
1 |
tagctgatagaggatcctgaatattgagtgatgttttgatgctatagcataccatagtgcagtgtcaccattcatatctgccaattattgttgagttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655521 |
tagctgatagaggatcctgaatattgagtgatgttttgatgctatagcataccatagtgcagtgtcaccattcatatctgccaattattgttgagttaaa |
655620 |
T |
|
| Q |
101 |
tataaaccttataaaaggaaatcacagaaaaatacatgtcttaagttaaaggataccttttatatgtatgttgcacgtatgcttaagcaagactttaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655621 |
tataaaccttataaaaggaaatcacagaaaaatacatgtcttaagttaaaggataccttttatatgtatgttgcacgtatgcttaagcaagactttaaca |
655720 |
T |
|
| Q |
201 |
cactcttcgtgcccatttgatgcagctatgtgctgcaaaaagaccaacaatttttaagttgttatgatcaaaagtcaaaactatattgaaggaaacataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655721 |
cactcttcgtgcccatttgatgcagctatgtgctgcaaaaagaccaacaatttttaagttgttatgatcaaaagtcaaaactatattgaaggaaacataa |
655820 |
T |
|
| Q |
301 |
tctaagaagcactgccaccgacacaaacaccggacacgacact |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655821 |
tctaagaagcactgccaccgacacaaacaccggacacgacact |
655863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University