View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20115_low_8 (Length: 319)
Name: NF20115_low_8
Description: NF20115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20115_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 990936 - 990642
Alignment:
| Q |
17 |
aaaagaagcagttgctacaagcgttttgtccaagaggtggactaatctctggcattatcttcccaatatcgatttcaccgacatcagagtgaataccgtt |
116 |
Q |
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| T |
990936 |
aaaagaagcagttgctacaagcgttttgtccaagaggtggactaatctctggcattatcttcccaatatcgatttcaccgacatcagagtgaataccgtt |
990837 |
T |
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| Q |
117 |
gaatccaatctccgttttaacgagtttgtgtactctgttttggtctctcgagacgctgctggatctcgttttattgacagtttccacctcaacattcagt |
216 |
Q |
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| T |
990836 |
gaatccaatctccgttttaacgaatttgtgtactctgttttggtctctcgagacgcttctggatctcgtttcattgacagtttccacctcaacattcagt |
990737 |
T |
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| Q |
217 |
atagtgattctcatcttgcctataataaagagttccccaatctcaccaaatgggtcaactctgttgttcaacgcggactcaagtatcttcatctc |
311 |
Q |
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| T |
990736 |
atagtgattctcatcttgcctataataaagagttccccaatctcaccaaatgggtcaactctgttgttcaacgcggactcaagtatcttcatctc |
990642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 1020125 - 1020041
Alignment:
| Q |
18 |
aaagaagcagttgctacaagcgttttgtccaagaggtggactaatctctggcattatcttcccaatatcgatttcaccgacatca |
102 |
Q |
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| T |
1020125 |
aaagaagcagttgctacaagcattctttcaaagagatggaataatctttggctctctcttcccaatatcgatttcaacaacatca |
1020041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 824327 - 824385
Alignment:
| Q |
25 |
cagttgctacaagcgttttgtccaagaggtggactaatctctggcattatcttcccaat |
83 |
Q |
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| T |
824327 |
cagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaat |
824385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 1019847 - 1019799
Alignment:
| Q |
263 |
caaatgggtcaactctgttgttcaacgcggactcaagtatcttcatctc |
311 |
Q |
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| T |
1019847 |
caaatgggtcaaccttgttgttcaacgcagactaaagtatcttcgtctc |
1019799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 8315571 - 8315729
Alignment:
| Q |
18 |
aaagaagcagttgctacaagcgttttgtccaagaggtggactaatctctggcattatcttcccaatatcgatttcaccgacatcagagtgaataccgttg |
117 |
Q |
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| T |
8315571 |
aaagaagcagttgctacaagcattctttcaaagagatggaataatctttggctctctcttcccaatatcgatttcaacaacatcaaaatcgataacattg |
8315670 |
T |
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| Q |
118 |
aatccaatctccgttttaacgagtttgtgtactctgttttggtctctcgagacgctgct |
176 |
Q |
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| T |
8315671 |
aatctaattcaagatttaacgattctgtttactctgttttagtctctcgagacactgct |
8315729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 22054539 - 22054695
Alignment:
| Q |
18 |
aaagaagcagttgctacaagcgttttgtccaagaggtggactaatctctggcattatcttcccaatatcgatttcaccgacatcagagtgaataccgttg |
117 |
Q |
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||||| ||| |||| ||||| |||||||||| || |||||| |||| || || | | |||| || ||||| |||||| |||||| |||||||| || | |
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| T |
22054539 |
aaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcctaagatcgacttcaccaacatcatagtgaatagcgacg |
22054638 |
T |
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| Q |
118 |
aatccaatctccgttttaacgagtttgtgtactctgttttggtctctcgagacgctg |
174 |
Q |
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|||| ||| |||||||| | |||||| |||| ||||||| |||||||||||||| |
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| T |
22054639 |
aatctaattcccgttttattcaatttgtgaactccgttttggcctctcgagacgctg |
22054695 |
T |
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