View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_high_11 (Length: 464)

Name: NF20116_high_11
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_high_11
NF20116_high_11
[»] chr8 (1 HSPs)
chr8 (28-454)||(43006890-43007318)
[»] chr6 (1 HSPs)
chr6 (190-268)||(27134163-27134241)
[»] chr4 (4 HSPs)
chr4 (190-260)||(47671754-47671824)
chr4 (224-266)||(23564540-23564582)
chr4 (234-266)||(8837026-8837058)
chr4 (228-264)||(55240474-55240510)
[»] chr3 (1 HSPs)
chr3 (224-268)||(50196942-50196986)
[»] chr5 (1 HSPs)
chr5 (224-266)||(33408175-33408217)
[»] chr7 (1 HSPs)
chr7 (222-266)||(33804319-33804363)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 28 - 454
Target Start/End: Original strand, 43006890 - 43007318
Alignment:
Q  28 tagctgattactttgaatcttatacgtttaactcatcaagaacaaggtcctaaaactcaatggagttagctgaatcaaagcatgctaggtcatcaagtag 127  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43006890 tagctgattactttgaatcttatacctttaactcatcaagaacaaggtcctaaaactcaatggagttagctgaatcaaagcatgctaggtcatcaagtag 43006989  T
Q  128 aaaatat--gtgtttgtagttattgaagttgtattggagtctcatgctattcatattctttgaggtataaatttgtttgaacactcttattttttaaact 225  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43006990 aaaatatatgtgtttgtagttattgaagttgtattagagtctcatgctattcatattctttgaggtataaatttgtttgaacactcttattttttaaact 43007089  T
Q  226 aacttttaggatgagattcaaaccaatttaacatggtatcaaatagagtaagaacatctgattacatattgtaatgtaggaatataacacatgactcaca 325  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43007090 aacttttgggataagattcaaaccaatttaacatggtatcaaatagagtaagaacatctgattacatattgtaatgtaggaatatagcacatgactcaca 43007189  T
Q  326 cttgacgtgagggtcgatattgaagttgtattagaatttcacatttttgtaggtttttggagtgtttgatgtatatatgcgattggacaccctcctcccc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43007190 cttgacgtgagggtcgatattgaagttgtattagaatttcacatttttttaggtttttggagtgtttgatgtatatatgcgattggacaccctcatcccc 43007289  T
Q  426 tgccttttattctatcgttgtgacctttg 454  Q
    ||||||||| ||||| |||||||||||||    
T  43007290 tgccttttaatctatggttgtgacctttg 43007318  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 27134163 - 27134241
Alignment:
Q  190 gtataaatttgtttgaacactcttattttttaaactaacttttaggatgagattcaaaccaatttaacatggtatcaaa 268  Q
    |||||||| |||||||  ||||| ||  |||||  || |||||||||||||||||||||  ||||||||||||||||||    
T  27134163 gtataaatatgtttgactactctcatcctttaacttagcttttaggatgagattcaaactcatttaacatggtatcaaa 27134241  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 47671824 - 47671754
Alignment:
Q  190 gtataaatttgtttgaacactcttattttttaaactaacttttaggatgagattcaaaccaatttaacatg 260  Q
    |||||||| ||||||||   ||||||||||| | ||||||||| |||||||||||||||  ||||||||||    
T  47671824 gtataaatgtgtttgaatgttcttatttttttatctaacttttgggatgagattcaaactcatttaacatg 47671754  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 23564582 - 23564540
Alignment:
Q  224 ctaacttttaggatgagattcaaaccaatttaacatggtatca 266  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||    
T  23564582 ctaacttttgggatgagatccaaacctatttaacatggtatca 23564540  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 8837058 - 8837026
Alignment:
Q  234 ggatgagattcaaaccaatttaacatggtatca 266  Q
    |||||||||||||||| ||||||||||||||||    
T  8837058 ggatgagattcaaacctatttaacatggtatca 8837026  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 55240474 - 55240510
Alignment:
Q  228 cttttaggatgagattcaaaccaatttaacatggtat 264  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  55240474 cttttgggatgagattcaagccaatttaacatggtat 55240510  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 50196942 - 50196986
Alignment:
Q  224 ctaacttttaggatgagattcaaaccaatttaacatggtatcaaa 268  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  50196942 ctaacttttgggatgagatccaaacctatttaacatggtatcaaa 50196986  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 33408217 - 33408175
Alignment:
Q  224 ctaacttttaggatgagattcaaaccaatttaacatggtatca 266  Q
    ||||||||| |||||||||||||||  ||||||||||||||||    
T  33408217 ctaacttttgggatgagattcaaactcatttaacatggtatca 33408175  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 33804363 - 33804319
Alignment:
Q  222 aactaacttttaggatgagattcaaaccaatttaacatggtatca 266  Q
    ||||||||||| ||||||||||||  || ||||||||||||||||    
T  33804363 aactaacttttgggatgagattcatgcctatttaacatggtatca 33804319  T

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