View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_15 (Length: 432)
Name: NF20116_high_15
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 44895072 - 44895466
Alignment:
| Q |
10 |
attattctattaacttttgagagaaaagagatattattctattaactttcgtttagccttgttaaacaattttttattttatcaaattgacattctttgt |
109 |
Q |
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| T |
44895072 |
attattctattaacttttgagagaagagagatattattctattaacttttgtttagccttgttaaacaattttttattttatcaaattgacattctttgt |
44895171 |
T |
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| Q |
110 |
ctaatctctgtacactatcatatcttccatctttctcattcaaatatggatagttcatcttgtcagtcgtgtcgcgtttgacgttaatacattcctctta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44895172 |
ctaatctctgtacactatcatatcttccatctttctcattcaaatatggattgttcatcttgtcagtcgtgtcgcgtttgacgttaatatattcctctta |
44895271 |
T |
|
| Q |
210 |
atttttaaaaagacaatgcactttgttattgttgttgtgtctgtattctaacctctacatgataggtggactatagagagatctacttcgaagcttcaaa |
309 |
Q |
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| T |
44895272 |
atttttaaaaagataatgcactttgttattgttgttgtgtctgtattctaacctctacatgataggaggactatagagagacctacttcgaagcttcaaa |
44895371 |
T |
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| Q |
310 |
aataagagcaagggattacaactccattgatggcc-aaaaattcgatagatgaattggtgnnnnnnngaagttattttggtaaactaataattgt |
403 |
Q |
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| T |
44895372 |
aataagagcaagggattacaactccattgatggccaaaaaaatcgatggatgaattgttgaaaaaaagaagttattttggtaaactaataattgt |
44895466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 8376646 - 8376686
Alignment:
| Q |
70 |
gttaaacaattttttattttatcaaattgacattctttgtc |
110 |
Q |
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| T |
8376646 |
gttaaacaattttttattttatcaaaatgaccttctttgtc |
8376686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 14536336 - 14536396
Alignment:
| Q |
50 |
attaactttcgtttagccttgttaaacaattttttattttatcaaattgacattctttgtc |
110 |
Q |
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||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||| |||||| |
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| T |
14536336 |
attaacttttgtttgaccttgctaaataattttttattttatcaaaatgacattttttgtc |
14536396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 27330756 - 27330800
Alignment:
| Q |
51 |
ttaactttcgtttagccttgttaaacaattttttattttatcaaa |
95 |
Q |
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| T |
27330756 |
ttaactttcttttaaccttgttaaacaaatttttattttatcaaa |
27330800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 51358247 - 51358156
Alignment:
| Q |
276 |
tggactatagagagatctacttcgaagcttcaaaaataagagcaagggattacaactccattgatggcca-aaaattcgatagatgaattgg |
366 |
Q |
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|||| |||| ||||| |||||| |||||| ||| |||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| |
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| T |
51358247 |
tggattatacagagacctactttaaagcttgggaaacaagagcaagggattactactcctttgatggccaaaaaaaccgatagatgaattgg |
51358156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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