View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_17 (Length: 430)
Name: NF20116_high_17
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 2817089 - 2816688
Alignment:
| Q |
14 |
attatacttcagaatttacaatacaacttgaaatttattatacaatcttcctgaacgagaaaaattaggtatacactctcaattatattatatggtacat |
113 |
Q |
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| T |
2817089 |
attatacttcagaatttacaatacaacttgaaatttattatacaatcttcctgaacgagaaaaattatgtatacactctcaattatattatatggtacat |
2816990 |
T |
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| Q |
114 |
ctaagaacatgaacgtnnnnnnnnnnnnnnnnttatgctatcactatttgaaaattgctcaataggctccttgaattgcttacagacccctcaaacagtc |
213 |
Q |
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| T |
2816989 |
ctaagaacatgaacgtaaaaaaaataaaaaaattatgctatcactattagaaaattgctcaataggctccttgaattgcttacagacccctcaaacagtc |
2816890 |
T |
|
| Q |
214 |
aaatatacccttcatggttcgtaactctggaactgtttagaagttaacttccaactcctgatcactcaagtttgggagttacgaccagatacaccttgaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
2816889 |
aaatatacccttcatggttcgtaactctggaactgtttagaagttaacttccaactcctgatcgctcaagtttgggagttacgaccagatacgccttgaa |
2816790 |
T |
|
| Q |
314 |
cataatagaacacgcatgttctgtttcctcataacataacacaggatggttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatg |
413 |
Q |
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|||||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816789 |
cataatagaacatgcatgttctatttccccataacataacacgggatggttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatg |
2816690 |
T |
|
| Q |
414 |
at |
415 |
Q |
| |
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|| |
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| T |
2816689 |
at |
2816688 |
T |
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