View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_19 (Length: 426)
Name: NF20116_high_19
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 171 - 406
Target Start/End: Original strand, 14720112 - 14720347
Alignment:
| Q |
171 |
tcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttcgaataccaatatcgttgcatgtcatatgttcattcttag |
270 |
Q |
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| T |
14720112 |
tcaaattcatgcatatgtgcacacatcatgaggattgtcataggatgatacaagaagattggaataccaatatcgttggatgtcatatgttcattcttag |
14720211 |
T |
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| Q |
271 |
ccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaaactatctttggcaatgtgcataacatggttagagttgctgaacaaaatgttgct |
370 |
Q |
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| T |
14720212 |
tcagaagctcaaaattttgaaacaaaagttgaaagtctggaataaaactgtctttggcaatgtgcataacatggttagagttgctgaacaaaatcttgct |
14720311 |
T |
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| Q |
371 |
caactgcaatctgatatggatatcaacggtatcact |
406 |
Q |
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| T |
14720312 |
caactgcaatctgatatggataccaatggtatcact |
14720347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 28187946 - 28187600
Alignment:
| Q |
17 |
cacacttaaagaagattggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatc |
116 |
Q |
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| T |
28187946 |
cacactgaaagaagattggatagagtgatttgtaatcaaaactggctggatgtttgcaactctctgaatgtgtcaacactggtaaagcacaagtcggatc |
28187847 |
T |
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| Q |
117 |
attttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggat |
216 |
Q |
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| T |
28187846 |
actttccactattacttgaatttgataattctactcatagttttacttcccaatttaaattcatgcaattgtggacccatcataaagattgtcacagggt |
28187747 |
T |
|
| Q |
217 |
gatacaagaagtttcgaataccaatatcgttgcatgtcatatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaa |
316 |
Q |
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| T |
28187746 |
gatacaagaagtctggaacacaaatattgttggctgtcatatattcattcttagccagaaactcaaaatcctaaagcaaaagttaaaagtctggaataaa |
28187647 |
T |
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| Q |
317 |
actatctttggcaatgtgcataacatggttagagttgctgaacaaaa |
363 |
Q |
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| T |
28187646 |
actgtttttggtaatgtgcacaacatggttaaagtggcagaacaaaa |
28187600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 7572280 - 7572610
Alignment:
| Q |
17 |
cacacttaaagaagattggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatc |
116 |
Q |
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|||||| ||||||||||||||||||| |||| ||||||| | |||| |||| ||||| ||||| |||||||| ||| |||||||||| |||||||||| |
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| T |
7572280 |
cacactgaaagaagattggatagagttatttttaatcaacaccggctggatgtctgcaattctctgaatgtgtcaacactggtaaagcataagtctgatc |
7572379 |
T |
|
| Q |
117 |
attttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggat |
216 |
Q |
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| T |
7572380 |
actttccactgttacttgaatttgataattcttctcatagttttgcttcccaatttaaatttatgcaaatgtggacccaccataaagattgtcgcagggt |
7572479 |
T |
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| Q |
217 |
gatacaagaagtttcgaataccaatatcgttgcatgtcatatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaa |
316 |
Q |
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| T |
7572480 |
gatacaagaagtctggaacacaaacattgttggttgtcatatgttcattctttgccagaaactaaaaattttaaagcaaaaattgaaagtttggaataaa |
7572579 |
T |
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| Q |
317 |
actatctttggcaatgtgcataacatggtta |
347 |
Q |
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| T |
7572580 |
actgtttttggtaatgtgcacaacatggtta |
7572610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 207
Target Start/End: Original strand, 10009597 - 10009703
Alignment:
| Q |
101 |
aagcacaagtctgatcattttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatg |
200 |
Q |
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| T |
10009597 |
aagcacaagtcagatcattttcctcttttagttgagtttgaaacttctcatcatagttttttgtcgcaatttaagtttatgcaaatgtggattcatcatg |
10009696 |
T |
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| Q |
201 |
aggattg |
207 |
Q |
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| T |
10009697 |
aagattg |
10009703 |
T |
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