View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_20 (Length: 425)
Name: NF20116_high_20
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 46937019 - 46937436
Alignment:
| Q |
1 |
atatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataatttattcacagcataaaaagctttacaccaacgatgtattatatata |
100 |
Q |
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| T |
46937019 |
atatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataatttattgacagcataaaaagctttacaccaacgatgtat-atatata |
46937117 |
T |
|
| Q |
101 |
aaatcatattacaaactctaaaggaaaaatcaatgaaatagataaatgtaataagccaagttactaaccgtatcttgaatagtttgcaatgaggtttgat |
200 |
Q |
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| T |
46937118 |
aaatcataatacaaactctaaaggaaaaatcaatgaaatagataaatgcaataagccaagttactaaccgtatcttgaatagtttgcaatgaggtttgat |
46937217 |
T |
|
| Q |
201 |
tttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatgaagttgtaggttaaaggttttagcag |
300 |
Q |
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| T |
46937218 |
tttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatgaagttgtaggttaaaggttttaacag |
46937317 |
T |
|
| Q |
301 |
cttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctgagctaagcatccaagaggacctgtatt |
400 |
Q |
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| T |
46937318 |
cttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggcaacattctgagctaagcatccaagaggacctgtatt |
46937417 |
T |
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| Q |
401 |
gtgtatccagaattatcta |
419 |
Q |
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| T |
46937418 |
gtgtatccagaaatatcta |
46937436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 180 - 359
Target Start/End: Complemental strand, 36639596 - 36639417
Alignment:
| Q |
180 |
tagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatgaagtt |
279 |
Q |
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|||||||||||||||| | |||||||||| ||||||||||||||||| |||||| ||||||||| || |||||||||||||| || | | | ||||| | |
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| T |
36639596 |
tagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggccctgcaatttactgcagaaatcttgaagat |
36639497 |
T |
|
| Q |
280 |
gtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaat |
359 |
Q |
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| T |
36639496 |
attgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaagtttcgatggatcagtgccaaat |
36639417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 397
Target Start/End: Complemental strand, 36634833 - 36634611
Alignment:
| Q |
175 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
274 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||||| |||| ||| || |
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| T |
36634833 |
ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg |
36634734 |
T |
|
| Q |
275 |
aagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctga |
374 |
Q |
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| T |
36634733 |
caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttga |
36634634 |
T |
|
| Q |
375 |
gctaagcatccaagaggacctgt |
397 |
Q |
| |
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| ||||||||||| |||||||| |
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| T |
36634633 |
cccaagcatccaagtggacctgt |
36634611 |
T |
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