View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20116_high_29 (Length: 384)
Name: NF20116_high_29
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 367
Target Start/End: Original strand, 29206009 - 29206383
Alignment:
| Q |
12 |
attctattcagttcatttccaatt--ggtatggtatgtaaagatccttaatcaaaggacacaaaaaacacgattcatctttattatttgtgacaaagaat |
109 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29206009 |
attctattcagttcatttccaaacaaggcatggtatgtaaagatccttaatcaaaggacacaaaaaacacgattcatctttattatttgtgacaaagaat |
29206108 |
T |
|
| Q |
110 |
acatnnnnnnnnnnnnnnnn-tctcgccgtctaattaagtggagctaggctatatggtacaaaagctctcaagttttctctctatggcat---------- |
198 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29206109 |
acataaaaaaaaataaaaaaatctcgccgtctaattaagtggagctaggctatatggtacaaaagctcttaagttttctctctatggcatggcatggata |
29206208 |
T |
|
| Q |
199 |
------aacatgcatgaaattaatgtgacattatagatgcttctcttcgcaactgtataaagcttctatttaatggggttgttaagagcttgatgaccac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29206209 |
gtgtacaacatgcatgaaattaatgtgacattatagatgcttctcttcgcaactgtataaagcttctatttaatggggttgttaagagcttgatgaccac |
29206308 |
T |
|
| Q |
293 |
attggtgcatgttgtaaaatccattgccagaggtgcagctccagcacttgctactcatcatgtgaatgcatgatt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29206309 |
attggtgcatgttgtaaaatccattgccagaggtgcagctccagcacttgctactcatcatgtgaatgcatgatt |
29206383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 38379783 - 38379680
Alignment:
| Q |
264 |
aatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgccagaggtgcagctccagcacttgctactcatcatgtgaatgcat |
363 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||||| |||||||| |||||||||||| | | |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38379783 |
aatggagttgttgagagtttgatgaccacattggtcaatgttgtagaatccattgccaaaagcacagctccaacacttgctactcatcatgtggatgcat |
38379684 |
T |
|
| Q |
364 |
gatt |
367 |
Q |
| |
|
|||| |
|
|
| T |
38379683 |
gatt |
38379680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University