View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_3 (Length: 607)
Name: NF20116_high_3
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 7626730 - 7626142
Alignment:
| Q |
1 |
tgaggaggagcacagatacatggcatgggaatgtctcacacttaccagaccaattccctaatttcacctgctccaattaacttgtgatagaacccacgta |
100 |
Q |
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|||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7626730 |
tgaggaagaacacacacacatggcatgggaatgtctcacacttaccagaccaattccctaatttcacctgctccaattaacttgtgatagaacccacgta |
7626631 |
T |
|
| Q |
101 |
cactaacactattgttttaaggtttagtacactgaataatgtacaagatcgatcattccaaacacattacatgtgtgtgacaaatgttaagggtagtata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
7626630 |
cactaacactattgttttaaggtttagtacactgaataatgtacaagatcgatcattccaaacacattacatgtgtgtgacaaatgttaagagtactata |
7626531 |
T |
|
| Q |
201 |
atattcatcaagttatcaactacatcaacttgccagctatatataacactgtttctttcagnnnnnnnnnnnnnnnnnaacctttcaattgatcacaact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7626530 |
atattcatcaagttatcaactacatcaacttgccagctatatataacactgtttctttcagttttttctttttgttttaacctttcaattgatcacaact |
7626431 |
T |
|
| Q |
301 |
tgcttgagtgcaaaacacaatttgtatgttttaacaataattatgtgtatatatccttaattcttgataagatttgaacttagataacatgtcctctcat |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7626430 |
tgcttgaatgcaaaacacaatttgtatgttttaacaataattatgtgcatatatccttaattcttgataagatttgaacttagataacatgtcctctcat |
7626331 |
T |
|
| Q |
401 |
aaaaacacaaccaactgaattatttcaacttaaagtttttgaacaattctctttaaggaatatttttagaaattattatttccataaaaatcattatttt |
500 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7626330 |
aacaacacaaccaactgaattatttcaacttaaagtttttcaacaattctctttaaggaatatttttagaaattattatttccataaaaatcattatttt |
7626231 |
T |
|
| Q |
501 |
ctacaagtttttgttgggttggaaattaggatttggaaaggacatacataccgataccaacaccctggcgtgacggctcatagtatagt |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7626230 |
ctacaagtttttgttgggttggaaattaggatttggaaaggacatacataccgataccaacaccctggcgtgacggctcatagtatagt |
7626142 |
T |
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