View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_30 (Length: 374)
Name: NF20116_high_30
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 36672055 - 36671794
Alignment:
| Q |
19 |
gaaaagagcgagagaagaaggtaacgatgaaattagggtttctgttttgtttttcagttgaattgagttatgacaatatgaaataatcgatgattttgtg |
118 |
Q |
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| T |
36672055 |
gaaaagagcgagagaagaaggtaacgatgaaattagggtttctgttttgtttttcagttgaattgatttatgaaaatatgaaataatcgatgattttctg |
36671956 |
T |
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| Q |
119 |
aaattaagggtaaagcgtcgtcgtcgaagaagagcaaaagcatcgccgatgaaacttccggtgccggtgagaagcttccctatgttcatgttcgcgttcg |
218 |
Q |
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| T |
36671955 |
aaattaagggtaaagcgtcgtcgtcgaagaagagcaaaagcatcgccgatgaaacttccggtgccggtgagaagcttccctatgttcatgttcgcgttcg |
36671856 |
T |
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| Q |
219 |
acgaggtcaagctactgatagccatagcttagcagaacgagtaaccttctcactaatcactg |
280 |
Q |
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| T |
36671855 |
acgaggtcaagctactgatagccatagcttagcagaacgagtaaccttctcactaatcactg |
36671794 |
T |
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Back To:
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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 21509021 - 21509085
Alignment:
| Q |
191 |
agcttccctatgttcatgttcgcgttcgacgaggtcaagctactgatagccatagcttagcagaa |
255 |
Q |
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| T |
21509021 |
agcttccgtacgttcacgttcgagttcgacgaggtcaagctactgatagccatagcttagcagaa |
21509085 |
T |
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