View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_32 (Length: 365)
Name: NF20116_high_32
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 42000283 - 42000625
Alignment:
| Q |
10 |
aatattataggtttgcttttgttttgtaacttcgttcttcttttaatgactttagtcacagtagtttgattgttaaaattgat-cccttggctacttttt |
108 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42000283 |
aatattataggtttgcttttgttttgtaactttgttcttcttttaatgactttagtcacagtagtttgattgttaaaattgattcccttggctacttttt |
42000382 |
T |
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| Q |
109 |
atctgattaagatgttttaaacatctaccaattaaaacatcaaatttcaccaaaaataaagaaaaccactttttctctttaatcactaatttttcaccgt |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42000383 |
atctgattaagatgttttaaacatccaccaattaaaacatcaaatttcaccaaaaataaagaaaaccactttttctctttaaacactaatttttcaccgt |
42000482 |
T |
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| Q |
209 |
tcaaattgttttgaaatttatctattgttttgaaag-tttaacaatttaaattattttagatctgattcatcatctaacctaaccctaaaatatatttta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42000483 |
tcaaattgttttgaaatttatctattgttttgaaagttttaacaatttaaattattttagatttgattcatcatctaacctaaccctaaaatatatttta |
42000582 |
T |
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| Q |
308 |
gt-nnnnnnntgatgctgcaaaagtattaaggtatcaaagttg |
349 |
Q |
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|| |||| ||||||||||||||||||| |||||||| |
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| T |
42000583 |
gtaaaaaaaatgattctgcaaaagtattaaggtaccaaagttg |
42000625 |
T |
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