View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_high_33 (Length: 357)

Name: NF20116_high_33
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_high_33
NF20116_high_33
[»] chr1 (9 HSPs)
chr1 (16-247)||(15373957-15374189)
chr1 (27-254)||(46358439-46358664)
chr1 (89-247)||(4530800-4530957)
chr1 (147-248)||(15374646-15374746)
chr1 (147-239)||(46357885-46357976)
chr1 (146-248)||(45597623-45597725)
chr1 (198-248)||(51610220-51610270)
chr1 (207-247)||(3788435-3788475)
chr1 (204-248)||(4626345-4626389)
[»] chr3 (9 HSPs)
chr3 (16-246)||(51492274-51492504)
chr3 (16-248)||(42146799-42147030)
chr3 (96-214)||(44385128-44385245)
chr3 (147-247)||(42147497-42147596)
chr3 (148-247)||(51491709-51491807)
chr3 (199-248)||(46580363-46580412)
chr3 (146-247)||(53714487-53714588)
chr3 (81-136)||(33968290-33968346)
chr3 (207-247)||(50306531-50306571)
[»] chr7 (8 HSPs)
chr7 (16-247)||(9379612-9379843)
chr7 (96-248)||(37693458-37693609)
chr7 (113-248)||(36661684-36661819)
chr7 (193-248)||(9378728-9378783)
chr7 (81-239)||(34996885-34997045)
chr7 (75-137)||(23624384-23624447)
chr7 (122-181)||(30915799-30915858)
chr7 (133-181)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (16-233)||(67807-68024)
scaffold0016 (147-247)||(67247-67346)
[»] chr2 (3 HSPs)
chr2 (89-247)||(6198795-6198951)
chr2 (132-247)||(5504344-5504458)
chr2 (207-247)||(26021919-26021959)
[»] chr8 (3 HSPs)
chr8 (89-247)||(511334-511491)
chr8 (253-340)||(44458876-44458969)
chr8 (253-340)||(44466409-44466502)
[»] chr6 (1 HSPs)
chr6 (74-144)||(25371271-25371342)
[»] chr4 (7 HSPs)
chr4 (122-248)||(5825333-5825457)
chr4 (122-182)||(20350402-20350462)
chr4 (197-248)||(55879793-55879844)
chr4 (194-248)||(49708720-49708774)
chr4 (81-137)||(38321177-38321233)
chr4 (129-173)||(6680273-6680317)
chr4 (74-137)||(34155500-34155564)
[»] chr5 (1 HSPs)
chr5 (207-247)||(30002864-30002904)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 15374189 - 15373957
Alignment:
Q  16 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15374189 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagga 15374090  T
Q  116 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaactttt-ccatggtggg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  15374089 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaacttttcccatggtggg 15373990  T
Q  215 aaaatatttccccatcccaccctaaatgccacc 247  Q
    ||||| |||||||||||||||||||||||||||    
T  15373989 aaaatctttccccatcccaccctaaatgccacc 15373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 46358439 - 46358664
Alignment:
Q  27 gagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagata 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  46358439 gagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggaga--aaagggtgtgggagata 46358536  T
Q  127 gtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccc 226  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||    
T  46358537 gtgtgaaaaaatttagtggtgagagactatgataaaactatgctcttcatttgattaaaggattagaaatcaactttcccatggtgggaaaatcttttcc 46358636  T
Q  227 catcccaccctaaatgccacctccgtag 254  Q
    ||||||||||||||||||||||||||||    
T  46358637 catcccaccctaaatgccacctccgtag 46358664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 4530800 - 4530957
Alignment:
Q  89 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaagg 187  Q
    ||||| ||||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||  |||     
T  4530800 tgagttgggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaaatatggtcttcatttgatctaaga 4530897  T
Q  188 attagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
     ||| ||||||||||| |||| ||||| || | ||||||   |||||||||||| |||||    
T  4530898 gttataaatcaactttcccattgtggggaattctttccctcacccaccctaaataccacc 4530957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 15374646 - 15374746
Alignment:
Q  147 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 246  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  15374646 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 15374744  T
Q  247 ct 248  Q
    ||    
T  15374745 ct 15374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 46357976 - 46357885
Alignment:
Q  147 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaa 239  Q
    ||||||||||||||||| | || |||| |||| || ||| || || ||||||||||  ||||||||| ||||||||||||| |||||||||||    
T  46357976 gagagactatgataaaagtgtgttctttatttaatccaatgacta-aaatcaacttgcccatggtggaaaaatatttccccttcccaccctaa 46357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 45597725 - 45597623
Alignment:
Q  146 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 245  Q
    |||||||||||||||| |||||| ||||  |||||| |||  |||| |||  | |||| | ||||||||||| | ||||||   ||||||||||||||||    
T  45597725 tgagagactatgataatactatggtctttctttgatccaaccattaaaaagtatctttcctatggtgggaaattctttccctcacccaccctaaatgcca 45597626  T
Q  246 cct 248  Q
    |||    
T  45597625 cct 45597623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 51610220 - 51610270
Alignment:
Q  198 aacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 248  Q
    |||||| |||||||||||||||||| | ||  |||||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatgccacct 51610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 3788475 - 3788435
Alignment:
Q  207 atggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  3788475 atggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 4626345 - 4626389
Alignment:
Q  204 tccatggtgggaaaatatttccccatcccaccctaaatgccacct 248  Q
    |||||||||||||| | ||||||  ||||||||||||||||||||    
T  4626345 tccatggtgggaaattttttccctctcccaccctaaatgccacct 4626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 51492274 - 51492504
Alignment:
Q  16 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51492274 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggg 51492373  T
Q  116 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtggga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  51492374 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggtggga 51492473  T
Q  216 aaatatttccccatcccaccctaaatgccac 246  Q
    |||| |||| |||||||||||||||||||||    
T  51492474 aaatctttctccatcccaccctaaatgccac 51492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 42147030 - 42146799
Alignment:
Q  16 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42147030 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggg 42146931  T
Q  116 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtggga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  42146930 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggtggga 42146831  T
Q  216 aaatatttccccatcccaccctaaatgccacct 248  Q
    |||| ||| ||||||||||||||||||||||||    
T  42146830 aaatcttt-cccatcccaccctaaatgccacct 42146799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 44385128 - 44385245
Alignment:
Q  96 ggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaa 194  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||    
T  44385128 ggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataa 44385225  T
Q  195 atcaacttttccatggtggg 214  Q
    ||||||||| |||| |||||    
T  44385226 atcaactttcccattgtggg 44385245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 42147497 - 42147596
Alignment:
Q  147 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 246  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  42147497 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 42147595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 51491807 - 51491709
Alignment:
Q  148 agagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
    |||||||||||||||| | || |||| |||| || ||| |  || |||||||||| |||||||||| ||||| ||||||| ||||||||||||| |||||    
T  51491807 agagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgtccatggtggaaaaatctttccccttcccaccctaaataccacc 51491709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 46580412 - 46580363
Alignment:
Q  199 acttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 248  Q
    ||||||||||||| ||||||| |||| ||  |||||||||||||||||||    
T  46580412 acttttccatggtaggaaaatctttctcctacccaccctaaatgccacct 46580363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 53714588 - 53714487
Alignment:
Q  146 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 245  Q
    |||||||||||||||| |||||| ||||  |||||| |||   ||| |||  | |||| ||||||||||||| | ||||||   ||||||||||||||||    
T  53714588 tgagagactatgataatactatggtctttctttgatccaaccgttaaaaagtatctttcccatggtgggaaattctttccctcacccaccctaaatgcca 53714489  T
Q  246 cc 247  Q
    ||    
T  53714488 cc 53714487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 33968346 - 33968290
Alignment:
Q  81 gtggtgggtgagtggggatggaggagagaaaagggt-gtgggagatagtgtgaaaaa 136  Q
    |||||||||||||||||||||| |||||| || | | ||| ||||||||||||||||    
T  33968346 gtggtgggtgagtggggatggaagagagagaatgatggtgagagatagtgtgaaaaa 33968290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 50306531 - 50306571
Alignment:
Q  207 atggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  50306531 atggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 9379612 - 9379843
Alignment:
Q  16 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggg 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  9379612 atgaagttgatgagagattgaaagagttgggaatttggacgcatggacttggttgtggtttgctcgtggtgggtgagtggggatggaggagagaaaatgg 9379711  T
Q  116 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtggga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |    
T  9379712 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccatagtggaa 9379811  T
Q  216 aaatatttccccatcccaccctaaatgccacc 247  Q
    |||| |||||||||||||||||||||||||||    
T  9379812 aaatctttccccatcccaccctaaatgccacc 9379843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 248
Target Start/End: Original strand, 37693458 - 37693609
Alignment:
Q  96 ggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaa 194  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||    
T  37693458 ggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataa 37693555  T
Q  195 atcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 248  Q
    ||||||||| |||| ||||| || | ||||||   |||||||||||| ||||||    
T  37693556 atcaactttcccattgtggggaattctttccctcacccaccctaaataccacct 37693609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 113 - 248
Target Start/End: Complemental strand, 36661819 - 36661684
Alignment:
Q  113 gggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtg 212  Q
    |||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||| |||||  || | | | |||   ||||| ||||||||    
T  36661819 gggtgtggaagatagtgtgaaaaaatctaatggtgagagtctataataaaattatgctcttcaattgatctaatggtcacaaaaatactttcccatggtg 36661720  T
Q  213 ggaaaatatttccccatcccaccctaaatgccacct 248  Q
    ||||| | ||||||   |||||||||||||||||||    
T  36661719 ggaaattctttccctcacccaccctaaatgccacct 36661684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 9378783 - 9378728
Alignment:
Q  193 aaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 248  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9378783 aaatcaactttcccatggtggaaaaatctttccccttcccaccctaaatgccacct 9378728  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 34997045 - 34996885
Alignment:
Q  81 gtggtgggtgagtggggatggaggagagaaaagggtg-tgggagatagtgtgaa---aaaatctagtggtgagagactatgataaaactatgctcttcat 176  Q
    ||||| |||||| |||||||||||||||| || |||| ||||||||||||||||   ||||||||||| ||| || |||| |||||| |||| | |||||    
T  34997045 gtggtaggtgag-ggggatggaggagagagaatggtggtgggagatagtgtgaaaaaaaaatctagtgttgaaagtctattataaaattatgttattcat 34996947  T
Q  177 ttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaa 239  Q
    || ||  || ||| | ||||| ||||| |||| |||||||| | |||| |  |||||||||||    
T  34996946 ttaatctaatgatcaaaaatc-actttcccatagtgggaaactctttctcattcccaccctaa 34996885  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 23624384 - 23624447
Alignment:
Q  75 ttgctcgtggtgggtgagtggggatggaggagagaaaagggt-gtgggagatagtgtgaaaaaa 137  Q
    ||||| ||||||||||| |||||||||| |||||| || ||| ||| |||||||||||||||||    
T  23624384 ttgcttgtggtgggtgaatggggatggaagagagagaatggtggtgagagatagtgtgaaaaaa 23624447  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 30915858 - 30915799
Alignment:
Q  122 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 181  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30915858 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30915799  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 30402788 - 30402836
Alignment:
Q  133 aaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 181  Q
    |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30402788 aaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30402836  T

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Target: scaffold0016 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 67807 - 68024
Alignment:
Q  16 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  67807 atgaagttgatgagagattgaaagagttgggaatttggacacatggacttggtggtggtttgttcgtggtgggtgagtggggatggaggagagaaaagga 67906  T
Q  116 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtggga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  67907 tgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccaaggtggga 68006  T
Q  216 aaatatttccccatccca 233  Q
    |||| |||||||||||||    
T  68007 aaatctttccccatccca 68024  T

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Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 67346 - 67247
Alignment:
Q  147 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 246  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  67346 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 67248  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 6198795 - 6198951
Alignment:
Q  89 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaagga 188  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||| ||||||| ||| |     
T  6198795 tgagttgggatggaggagagaa--gggtgtgggagatagtgtaaaaaaatctagtggtgagagcctataataaaattatgctctttatttgatccaaagg 6198892  T
Q  189 ttagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
    ||| ||||||||||| | ||| ||||||| | ||||||   ||||||||||||||||||    
T  6198893 ttataaatcaactttcctatgatgggaaattctttccctcacccaccctaaatgccacc 6198951  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 5504458 - 5504344
Alignment:
Q  132 aaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcc 231  Q
    ||||||||||||| ||| |  |||| |||||| |||| | ||||||||||  || | | | |||||| |||||| || |||||||| | ||||||| |||    
T  5504458 aaaaaatctagtgttgaaaatctattataaaattatgttattcatttgatctaatggtcaaaaatca-cttttctatagtgggaaactctttccccttcc 5504360  T
Q  232 caccctaaatgccacc 247  Q
    ||||||||||||||||    
T  5504359 caccctaaatgccacc 5504344  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 26021919 - 26021959
Alignment:
Q  207 atggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  26021919 atggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 511334 - 511491
Alignment:
Q  89 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaagg 187  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||| |    
T  511334 tgagttgggatggaggagagaa--gggtgtgggagatagtgtgaaaaaaatctagtggtgagagcctataataaaattatgctcttcatttgatccaaag 511431  T
Q  188 attagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
     ||| ||||||||||| | ||| ||||||| | |||||    ||||||||||||||||||    
T  511432 gttataaatcaactttcctatgatgggaaattctttccttcacccaccctaaatgccacc 511491  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 44458876 - 44458969
Alignment:
Q  253 agcgaactgatcaagtactactaaagtggtgatagtgtaac------tgtgaaagccaaacatcaaacaaaaacaatacctagccgcttgtccc 340  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||||    
T  44458876 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtgaatgtgaaagccaaacatcaaacaaaaacaaaacctagccgcttgtccc 44458969  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 44466409 - 44466502
Alignment:
Q  253 agcgaactgatcaagtactactaaagtggtgatagtgtaac------tgtgaaagccaaacatcaaacaaaaacaatacctagccgcttgtccc 340  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||||    
T  44466409 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtgaatgtgaaagccaaacatcaaacaaaaacaaaacctagccgcttgtccc 44466502  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 25371342 - 25371271
Alignment:
Q  74 tttgctcgtggtgggtgagtggggatggaggagagaaaagggtg-tgggagatagtgtgaaaaaatctagtg 144  Q
    |||||| ||||||||||||| |||||||| |||||| || | || || ||||||||||||||||||||||||    
T  25371342 tttgcttgtggtgggtgagtagggatggaagagagagaatgatggtgagagatagtgtgaaaaaatctagtg 25371271  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 5825457 - 5825333
Alignment:
Q  122 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatat 221  Q
    ||||||||| ||||||||||||| ||||||| || ||||| | | || || |||||||||  || | |||||||  |||||| | ||||||||||| | |    
T  5825457 agatagtgt-aaaaaatctagtgttgagagagtaggataataatgtgttcctcatttgatctaatggttagaaaa-aactttgctatggtgggaaactct 5825360  T
Q  222 ttccccatcccaccctaaatgccacct 248  Q
    |||||  ||||||||||||||||||||    
T  5825359 ttcccattcccaccctaaatgccacct 5825333  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 20350462 - 20350402
Alignment:
Q  122 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatt 182  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| |||||||||||||    
T  20350462 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatgatcttcatttgatt 20350402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 55879844 - 55879793
Alignment:
Q  197 caacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 248  Q
    ||||||| ||||||||||||| ||||||||   |||||||||||||||||||    
T  55879844 caactttcccatggtgggaaattatttccctcacccaccctaaatgccacct 55879793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 49708720 - 49708774
Alignment:
Q  194 aatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 248  Q
    |||| ||||||||||||||||||| | ||||||   |||||||||||||||||||    
T  49708720 aatctacttttccatggtgggaaattctttccctcacccaccctaaatgccacct 49708774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 38321177 - 38321233
Alignment:
Q  81 gtggtgggtgagtggggatggaggagagaaaagggtg-tgggagatagtgtgaaaaaa 137  Q
    ||||| |||||| |||||||||||||||| || |||| ||||||||||||||||||||    
T  38321177 gtggtaggtgag-ggggatggaggagagagaatggtggtgggagatagtgtgaaaaaa 38321233  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 6680273 - 6680317
Alignment:
Q  129 gtgaaaaaatctagtggtgagagactatgataaaactatgctctt 173  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||    
T  6680273 gtgaaaaaatctagtgttgagaatctatgataaaactatgttctt 6680317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 34155500 - 34155564
Alignment:
Q  74 tttgctcgtggtgggtgagtggggatggaggagagaaaagggt-gtgggagatagtgtgaaaaaa 137  Q
    |||||| ||||||||||||||||| |||| |||||| || | | ||| |||||||||||||||||    
T  34155500 tttgcttgtggtgggtgagtgggggtggaagagagagaatgatggtgagagatagtgtgaaaaaa 34155564  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 30002904 - 30002864
Alignment:
Q  207 atggtgggaaaatatttccccatcccaccctaaatgccacc 247  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  30002904 atggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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