View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_high_37 (Length: 346)

Name: NF20116_high_37
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_high_37
NF20116_high_37
[»] chr3 (1 HSPs)
chr3 (18-334)||(27484592-27484908)
[»] chr4 (4 HSPs)
chr4 (112-218)||(24414331-24414437)
chr4 (138-219)||(54239217-54239298)
chr4 (138-219)||(15634324-15634404)
chr4 (19-113)||(21041353-21041445)
[»] chr6 (1 HSPs)
chr6 (114-219)||(2339451-2339556)
[»] chr1 (1 HSPs)
chr1 (138-219)||(50005480-50005561)
[»] chr8 (4 HSPs)
chr8 (121-211)||(16848321-16848411)
chr8 (133-208)||(9295023-9295098)
chr8 (112-219)||(28856192-28856299)
chr8 (135-165)||(12310443-12310473)
[»] chr7 (3 HSPs)
chr7 (114-219)||(16931136-16931242)
chr7 (114-219)||(16936519-16936625)
chr7 (138-219)||(721878-721959)
[»] chr5 (3 HSPs)
chr5 (113-224)||(14503723-14503834)
chr5 (112-219)||(35161125-35161232)
chr5 (22-81)||(19705908-19705967)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 27484908 - 27484592
Alignment:
Q  18 gaacatgtgtttacaagtgggatcaattctcactttataaaccggttttgcggagttgtgttagacactcaaccacaaattttaagatagtattagtgat 117  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||| ||||||||||||||||||    
T  27484908 gaacatgtgtttataagtgagatcaattctcactttataaaccggttttgtggggttgtgtcagacactcaaccacgaattctaagatagtattagtgat 27484809  T
Q  118 ttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaat 217  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| | |||||||| |||||||||    
T  27484808 ttaggcaaactggtggcacatatcgaagataaagtggcgcacaagaaaggttaacttgaaatagtgtagatttgacatctggtgtcagatcgactcgaat 27484709  T
Q  218 taaaaaatcaaaatggtaatttagcctataattagagggtgtggaagatatttcnnnnnnnnnnnnnntgagggttggaagaggaaacatgctttcaaat 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||    
T  27484708 taaaaaatcaaaatagtaatttagcctataattagagggtgtggaagatatttcaaaaaacaaaaaaatgagggttggaagaggaaacatgctttcaaat 27484609  T
Q  318 gaaaagacctacagttc 334  Q
    |||||||||||||||||    
T  27484608 gaaaagacctacagttc 27484592  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 24414437 - 24414331
Alignment:
Q  112 agtgatttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgac 211  Q
    |||||| |||| ||||||||||  | ||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||| |||||||    
T  24414437 agtgatgtaggtaaattggtggtgcgtatagaagatgaagtggcgcgcaagaaatgctcacttggaatagtgtagatttgatatctgatgtcggattgac 24414338  T
Q  212 tcgaatt 218  Q
    |||||||    
T  24414337 tcgaatt 24414331  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 54239217 - 54239298
Alignment:
Q  138 tatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaatta 219  Q
    |||||||||| ||||| ||| ||||||||||||| |  |||||||||||||||||||| ||| ||| ||||||||| |||||    
T  54239217 tatcgaagatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtagatttgacattcgaagtcggattgactcaaatta 54239298  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 15634324 - 15634404
Alignment:
Q  138 tatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaatta 219  Q
    |||||||| | ||||||||||||||||| ||||  |||||||| ||||||||||||||| | |||| ||||||||| |||||    
T  15634324 tatcgaagttgaagtggcgcacaagaaa-gctcgtttgaaatattgtagatttgacatctggtgtcggattgactcaaatta 15634404  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 21041353 - 21041445
Alignment:
Q  19 aacatgtgtttacaagtgggatcaattctcactttataaaccggttttgcggagttgtgttagacactcaaccacaaattttaagatagtattag 113  Q
    |||||||||||| |||||||   ||| ||||| | | |||||||||||||| |||| |||||| ||  |||||||||||| ||||||||||||||    
T  21041353 aacatgtgtttataagtggggaaaatcctcacctcacaaaccggttttgcgaagttatgttaggca--caaccacaaattctaagatagtattag 21041445  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 2339556 - 2339451
Alignment:
Q  114 tgatttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgactc 213  Q
    |||| ||| |||| ||| ||| ||||| |||||| ||||||| ||||||||||||||||||||||| ||||||||||   ||||||||||||| |||| |    
T  2339556 tgatgtagacaaactggcggcgcatattgaagatgaagtggctcacaagaaatgctcacttgaaatggtgtagattttgtatccgatgtcagaatgaccc 2339457  T
Q  214 gaatta 219  Q
    ||||||    
T  2339456 gaatta 2339451  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 50005561 - 50005480
Alignment:
Q  138 tatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaatta 219  Q
    |||||||||| | ||||||| ||||||    ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  50005561 tatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgcagatttgatatccgatgtcagattgactcgaatta 50005480  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 16848321 - 16848411
Alignment:
Q  121 ggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgac 211  Q
    |||||| ||| ||| | |||||||||| |||||||||| ||||||  |||||||  ||||||| ||||||||||||||||||| |||||||    
T  16848321 ggcaaactggcggcgcgtatcgaagatgaagtggcgcataagaaagactcacttagaatagtgcagatttgacatccgatgtcggattgac 16848411  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 9295023 - 9295098
Alignment:
Q  133 gcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagatt 208  Q
    |||| |||||||||| |||||| ||  |||||||||||| |  |||||||||||||||| |||||| |||| ||||    
T  9295023 gcacgtatcgaagatgaagtggtgcgtaagaaatgctcaatgaaaatagtgtagatttggcatccggtgtcggatt 9295098  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 28856299 - 28856192
Alignment:
Q  112 agtgatttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgac 211  Q
    |||||| |||| ||| |||| ||||||||| |||||||| ||| ||  |||||| |||||    ||||| || ||||||||||||||  || ||||||||    
T  28856299 agtgatgtaggtaaactggttgcacatatcaaagataaaatggtgcgtaagaaaggctcatcgaaaatattgcagatttgacatccgtcgttagattgac 28856200  T
Q  212 tcgaatta 219  Q
    ||||||||    
T  28856199 tcgaatta 28856192  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 12310443 - 12310473
Alignment:
Q  135 acatatcgaagataaagtggcgcacaagaaa 165  Q
    |||||||||||||||||||||||||||||||    
T  12310443 acatatcgaagataaagtggcgcacaagaaa 12310473  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 16931136 - 16931242
Alignment:
Q  114 tgatttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtaga-tttgacatccgatgtcagattgact 212  Q
    |||| |||||||||||| ||| | |||||||||| |||||||   ||||||||||||||||| ||||||| ||| |||| |||||| |||| ||||| ||    
T  16931136 tgatgtaggcaaattggcggcgcgtatcgaagattaagtggcatgcaagaaatgctcacttggaatagtgcagattttggcatccggtgtcggattggct 16931235  T
Q  213 cgaatta 219  Q
    |||||||    
T  16931236 cgaatta 16931242  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 16936519 - 16936625
Alignment:
Q  114 tgatttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtaga-tttgacatccgatgtcagattgact 212  Q
    |||| |||||||||||| ||| | |||||||||| |||||||   ||||||||||||||||| ||||||| ||| |||| |||||| |||| ||||| ||    
T  16936519 tgatgtaggcaaattggcggcgcgtatcgaagattaagtggcatgcaagaaatgctcacttggaatagtgcagattttggcatccggtgtcggattggct 16936618  T
Q  213 cgaatta 219  Q
    |||||||    
T  16936619 cgaatta 16936625  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 721959 - 721878
Alignment:
Q  138 tatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaatta 219  Q
    |||||||||| ||||||| |||||||||  |||| |   ||||||||||||||| |||||| |||| ||||||||| |||||    
T  721959 tatcgaagatgaagtggcacacaagaaagactcaatgtgaatagtgtagatttgccatccggtgtcggattgactcaaatta 721878  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 14503723 - 14503834
Alignment:
Q  113 gtgatttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgact 212  Q
    ||||| |||||||| |||  |||| ||| |||||||||||||||| ||||||| | ||| |  |||||||| |||||| ||||| | |||||||||||||    
T  14503723 gtgatgtaggcaaagtggctgcacttattgaagataaagtggcgcgcaagaaaggttcaataaaaatagtgcagatttaacatctggtgtcagattgact 14503822  T
Q  213 cgaattaaaaaa 224  Q
    | ||||| ||||    
T  14503823 caaattataaaa 14503834  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 35161232 - 35161125
Alignment:
Q  112 agtgatttaggcaaattggtggcacatatcgaagataaagtggcgcacaagaaatgctcacttgaaatagtgtagatttgacatccgatgtcagattgac 211  Q
    |||||| ||| ||||  |||| ||| |||||||||| ||||| || |||||||||| ||| ||| |||||||||||||||||||||| |||  | ||||     
T  35161232 agtgatgtagtcaaaccggtgacacgtatcgaagatgaagtgacgtacaagaaatgttcatttggaatagtgtagatttgacatccgttgttgggttgat 35161133  T
Q  212 tcgaatta 219  Q
    ||||||||    
T  35161132 tcgaatta 35161125  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 19705908 - 19705967
Alignment:
Q  22 atgtgtttacaagtgggatcaattctcactttataaaccggttttgcggagttgtgttag 81  Q
    ||||||||| |||||||  |||| ||||| |||||| ||||||||| |||||||||||||    
T  19705908 atgtgtttataagtgggggcaatcctcaccttataagccggttttgtggagttgtgttag 19705967  T

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