View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_44 (Length: 327)
Name: NF20116_high_44
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 33444505 - 33444805
Alignment:
| Q |
11 |
agaatatcaaatgtct---tatagctacttaaccgagctgtattcacatgaaataagaatggacaatttagtccattaaatcttcgataacataatttga |
107 |
Q |
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| T |
33444505 |
agaatatcaaatgtctaattatagctacttaaccgagctgtattcacatgaaataagaatggacaatttagtccattaaatcttcgataacataatttga |
33444604 |
T |
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| Q |
108 |
gactaattgacagactcaaaaggactaatgtttttcaaatattcttttgaaatttcgttaattttggagaccaaattactcaaccctaagccgttgaatg |
207 |
Q |
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| T |
33444605 |
gactaattgacagactcaaaaggactaatgtttttcaaatattcttttgaaatttcgttaattttggaaaccaaattactcaaccctaagccgttgaatg |
33444704 |
T |
|
| Q |
208 |
tgtgatttccatctaacannnnnnnagaaaagcttagtgaagtctcctatggttactatgatcaattgtcggaattaagttgaaaattttggacttactg |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33444705 |
tgtgatttccatctaacattttcttagaaaagcttagtgaagtctcctatggttactatgatcaattgtcgggattaagttgaaaattttggacttactg |
33444804 |
T |
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| Q |
308 |
c |
308 |
Q |
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| T |
33444805 |
c |
33444805 |
T |
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