View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_58 (Length: 273)
Name: NF20116_high_58
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 41652879 - 41653138
Alignment:
| Q |
17 |
taggcagagttggtaatatggcgtagctataaatactctcacaaacctctttctttc---------------------caaaccctaacctctctctttc |
95 |
Q |
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| T |
41652879 |
taggcagagttggtaatatggcgtagctataaatactctcacaaacctctttctttctttcttcacttcaattcaattcaaaccctaacctctctctttc |
41652978 |
T |
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| Q |
96 |
tctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41652979 |
tctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctg |
41653078 |
T |
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| Q |
196 |
tttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaacc |
255 |
Q |
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| T |
41653079 |
tttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaacc |
41653138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 28820172 - 28820106
Alignment:
| Q |
189 |
gattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaacc |
255 |
Q |
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| T |
28820172 |
gattctatttccagtctttctttcagtcctaaagccaatttcctcgtcgctacttcctgggacaacc |
28820106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 1466350 - 1466287
Alignment:
| Q |
187 |
ctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttggga |
250 |
Q |
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| T |
1466350 |
ctgattctgtttccagtctcaatttcagtcccaaatccaacttacttgttgctacttcttggga |
1466287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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