View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_high_6 (Length: 554)

Name: NF20116_high_6
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_high_6
NF20116_high_6
[»] chr1 (3 HSPs)
chr1 (13-233)||(24820289-24820509)
chr1 (477-536)||(35241154-35241213)
chr1 (277-309)||(14185525-14185557)
[»] chr7 (3 HSPs)
chr7 (20-112)||(37361000-37361092)
chr7 (245-312)||(37361311-37361378)
chr7 (104-179)||(37361234-37361309)
[»] chr6 (2 HSPs)
chr6 (118-184)||(18331314-18331380)
chr6 (254-312)||(18331401-18331459)
[»] chr2 (2 HSPs)
chr2 (118-184)||(38945241-38945307)
chr2 (254-312)||(38945328-38945386)
[»] chr3 (1 HSPs)
chr3 (111-220)||(55352450-55352559)
[»] chr5 (1 HSPs)
chr5 (111-220)||(18447268-18447377)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 24820509 - 24820289
Alignment:
Q  13 cagagacaaaaggatcacatatagtttcaatcacacaacttacaaacaattaaacccaatagaaaccatgcaattttgccaagcatcacttcaaaaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24820509 cagagacaaaaggatcacatatagtttcaatcacacaacttacaaacaattaaacccaatagaaaccatgcaattttgccaagcatcacttcaaaaaata 24820410  T
Q  113 ttaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactcacatatgtataacttgaaatttgaaacc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24820409 ttaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacgcatatgacagaaactcacatatgtataacttgaaatttgaaacc 24820310  T
Q  213 tatagaaggagacacccacac 233  Q
    |||||||||||||||||||||    
T  24820309 tatagaaggagacacccacac 24820289  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 35241154 - 35241213
Alignment:
Q  477 ttgtttattgatacacatagcaatctatacccagcttactataatagtatatgcaattag 536  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||| || |||||||||    
T  35241154 ttgtttattgatatacatagcaatctatactcagcttacaataatagcatctgcaattag 35241213  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 14185557 - 14185525
Alignment:
Q  277 taaaactaatcacaacatttataggtagtttaa 309  Q
    |||||||||||||||||| ||||||||||||||    
T  14185557 taaaactaatcacaacatgtataggtagtttaa 14185525  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 37361000 - 37361092
Alignment:
Q  20 aaaaggatcacatatagtttcaatcacacaacttacaaacaattaaacccaatagaaaccatgcaattttgccaagcatcacttcaaaaaata 112  Q
    |||||||||||||| ||||||||||||||||||||||||  | |||| |||||||||| | |||||||  |||||||||||||||||||||||    
T  37361000 aaaaggatcacatagagtttcaatcacacaacttacaaaatagtaaaaccaatagaaatcttgcaattaagccaagcatcacttcaaaaaata 37361092  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 37361311 - 37361378
Alignment:
Q  245 taatgaaacttaaaatctaccgttacattttgtaaaactaatcacaacatttataggtagtttaatca 312  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||| ||||||||    
T  37361311 taatgaaacttaaaatctaccattaaattttgtaaaactaatcacaacatttatcagtattttaatca 37361378  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 37361234 - 37361309
Alignment:
Q  104 caaaaaatattaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacaga 179  Q
    |||||||||||||| | |||||||||||   || |||||||||| ||||||||| ||||| ||| | |||||||||    
T  37361234 caaaaaatattaaaacttgtaaatcaccagtttatcaaaatttatgaaagagataagaatgcacgcctatgacaga 37361309  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 18331314 - 18331380
Alignment:
Q  118 ccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactc 184  Q
    |||||||| ||||| | || |||||||||||||||||||| |||||| |||||||||||||||||||    
T  18331314 ccatgtaagtcaccaaattatcaaaatttaagaaagagataagaatagacacatatgacagaaactc 18331380  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 18331401 - 18331459
Alignment:
Q  254 ttaaaatctaccgttacattttgtaaaactaatcacaacatttataggtagtttaatca 312  Q
    |||||||||  | |||||||||||||||||  |||||| |||||||||||| |||||||    
T  18331401 ttaaaatctttcattacattttgtaaaacttctcacaatatttataggtagcttaatca 18331459  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 38945241 - 38945307
Alignment:
Q  118 ccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactc 184  Q
    |||||||| ||||| | || |||||||||||||||||||| |||||| |||||||||||||||||||    
T  38945241 ccatgtaagtcaccaaattatcaaaatttaagaaagagataagaatagacacatatgacagaaactc 38945307  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 38945328 - 38945386
Alignment:
Q  254 ttaaaatctaccgttacattttgtaaaactaatcacaacatttataggtagtttaatca 312  Q
    |||||||||  | ||||||||||||||||| |||||||||||||||||||| |||||||    
T  38945328 ttaaaatctttcattacattttgtaaaactcatcacaacatttataggtagcttaatca 38945386  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 55352559 - 55352450
Alignment:
Q  111 tattaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactcacatatgtataacttgaaatttgaaa 210  Q
    ||||||||||||||||| ||| | |  |||||  ||||||||||| | ||||||||||| |||||||  ||||| |||||||||| ||| | ||||| ||    
T  55352559 tattaaaccatgtaaattaccaaatcatcaaatcttaagaaagaggtaagaatacacacctatgacaacaactctcatatgtatagcttcacatttgcaa 55352460  T
Q  211 cctatagaag 220  Q
    ||||||||||    
T  55352459 cctatagaag 55352450  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 18447268 - 18447377
Alignment:
Q  111 tattaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactcacatatgtataacttgaaatttgaaa 210  Q
    ||||||||||||||||| ||| | |  |||||  ||||||||||||| ||||||||||| | |||||  ||||| |||||||||| ||| | ||||| ||    
T  18447268 tattaaaccatgtaaattaccaaatcatcaaatcttaagaaagagataagaatacacacctttgacaacaactctcatatgtatagcttcacatttgcaa 18447367  T
Q  211 cctatagaag 220  Q
    ||| ||||||    
T  18447368 cctgtagaag 18447377  T

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