View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_high_66 (Length: 255)

Name: NF20116_high_66
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_high_66
NF20116_high_66
[»] chr8 (38 HSPs)
chr8 (1-242)||(29433982-29434223)
chr8 (54-242)||(39444964-39445153)
chr8 (54-242)||(12250054-12250243)
chr8 (54-242)||(23626199-23626388)
chr8 (54-242)||(39204574-39204762)
chr8 (63-163)||(41907800-41907900)
chr8 (166-242)||(6477461-6477537)
chr8 (166-242)||(38993626-38993702)
chr8 (166-242)||(41156582-41156658)
chr8 (166-242)||(44382769-44382845)
chr8 (166-242)||(44599645-44599721)
chr8 (166-242)||(22333089-22333165)
chr8 (166-242)||(42810905-42810981)
chr8 (166-238)||(22946782-22946854)
chr8 (166-242)||(23522625-23522701)
chr8 (172-242)||(12760418-12760488)
chr8 (166-238)||(33424227-33424299)
chr8 (166-242)||(38962112-38962188)
chr8 (166-242)||(38992456-38992532)
chr8 (166-242)||(41977402-41977478)
chr8 (166-238)||(14078798-14078870)
chr8 (166-238)||(45293543-45293615)
chr8 (54-128)||(2961188-2961262)
chr8 (166-238)||(27273180-27273252)
chr8 (166-242)||(19248051-19248127)
chr8 (166-242)||(19321235-19321311)
chr8 (166-238)||(30826402-30826474)
chr8 (166-242)||(41628834-41628910)
chr8 (166-242)||(3751054-3751131)
chr8 (166-210)||(16668794-16668838)
chr8 (166-210)||(19395532-19395576)
chr8 (191-242)||(6300610-6300661)
chr8 (191-242)||(23966513-23966564)
chr8 (166-205)||(36597941-36597980)
chr8 (191-242)||(37029781-37029832)
chr8 (191-242)||(44940385-44940436)
chr8 (79-145)||(27244464-27244530)
chr8 (2-42)||(2961100-2961140)
[»] chr7 (33 HSPs)
chr7 (54-242)||(42244728-42244916)
chr7 (54-242)||(38434421-38434610)
chr7 (54-242)||(42996651-42996840)
chr7 (78-242)||(4481283-4481447)
chr7 (12-163)||(9226124-9226272)
chr7 (166-241)||(42827331-42827406)
chr7 (166-242)||(17478091-17478167)
chr7 (166-242)||(17575047-17575123)
chr7 (166-242)||(17482534-17482610)
chr7 (166-242)||(17570604-17570680)
chr7 (166-242)||(9149565-9149641)
chr7 (166-242)||(11500062-11500138)
chr7 (166-242)||(17469935-17470011)
chr7 (166-242)||(17583203-17583279)
chr7 (166-242)||(33638660-33638736)
chr7 (166-240)||(8925888-8925962)
chr7 (166-242)||(23299707-23299783)
chr7 (166-242)||(27735034-27735109)
chr7 (166-242)||(33030999-33031075)
chr7 (54-130)||(34130539-34130615)
chr7 (166-242)||(42918026-42918102)
chr7 (166-238)||(23766423-23766495)
chr7 (170-242)||(47174656-47174728)
chr7 (166-247)||(41262324-41262405)
chr7 (166-210)||(5962931-5962975)
chr7 (166-238)||(14309060-14309132)
chr7 (166-242)||(19521328-19521404)
chr7 (166-210)||(42687787-42687831)
chr7 (62-140)||(19124047-19124125)
chr7 (62-158)||(19123034-19123129)
chr7 (191-242)||(47573462-47573513)
chr7 (1-42)||(42244673-42244714)
chr7 (62-106)||(1484744-1484788)
[»] chr4 (38 HSPs)
chr4 (54-242)||(3839248-3839436)
chr4 (54-242)||(26870171-26870360)
chr4 (166-242)||(7643787-7643863)
chr4 (166-242)||(28973280-28973356)
chr4 (54-141)||(1944738-1944825)
chr4 (166-242)||(8531034-8531110)
chr4 (166-242)||(38008062-38008138)
chr4 (166-242)||(2776495-2776571)
chr4 (166-242)||(17740258-17740334)
chr4 (166-242)||(19831392-19831468)
chr4 (166-242)||(22116046-22116122)
chr4 (166-242)||(28135060-28135136)
chr4 (166-242)||(39742741-39742817)
chr4 (166-242)||(53342627-53342703)
chr4 (172-242)||(41984235-41984305)
chr4 (166-239)||(36857308-36857381)
chr4 (166-238)||(5272270-5272342)
chr4 (166-242)||(21353302-21353378)
chr4 (166-238)||(54331638-54331710)
chr4 (166-242)||(13628270-13628347)
chr4 (166-242)||(35495538-35495614)
chr4 (166-242)||(47557420-47557496)
chr4 (54-128)||(15650665-15650739)
chr4 (166-231)||(40622377-40622442)
chr4 (166-238)||(14829506-14829578)
chr4 (166-242)||(33502992-33503068)
chr4 (166-238)||(34056558-34056630)
chr4 (166-242)||(37701592-37701670)
chr4 (172-242)||(17699395-17699465)
chr4 (166-236)||(55998707-55998777)
chr4 (1-42)||(3839187-3839228)
chr4 (191-242)||(740430-740481)
chr4 (191-242)||(15520934-15520985)
chr4 (166-205)||(23479156-23479195)
chr4 (62-155)||(35828742-35828835)
chr4 (214-242)||(1944710-1944738)
chr4 (111-151)||(6229636-6229676)
chr4 (2-42)||(15650577-15650617)
[»] chr1 (30 HSPs)
chr1 (54-242)||(12714684-12714872)
chr1 (54-242)||(28565571-28565759)
chr1 (54-242)||(28631519-28631708)
chr1 (54-242)||(13662261-13662449)
chr1 (170-242)||(17671663-17671735)
chr1 (166-242)||(45004939-45005015)
chr1 (166-242)||(47135602-47135678)
chr1 (166-242)||(50561248-50561324)
chr1 (166-242)||(48340536-48340612)
chr1 (166-242)||(52310041-52310117)
chr1 (166-242)||(16031571-16031647)
chr1 (166-242)||(51965700-51965776)
chr1 (180-242)||(36681450-36681512)
chr1 (166-247)||(38845215-38845296)
chr1 (166-238)||(18814430-18814502)
chr1 (166-238)||(34687798-34687870)
chr1 (166-238)||(34692326-34692398)
chr1 (166-242)||(44406567-44406643)
chr1 (166-238)||(31619900-31619972)
chr1 (166-238)||(41830017-41830089)
chr1 (189-238)||(12245831-12245880)
chr1 (54-107)||(15317492-15317545)
chr1 (191-242)||(24294736-24294787)
chr1 (192-242)||(39760143-39760193)
chr1 (166-231)||(41962896-41962961)
chr1 (166-201)||(52521585-52521620)
chr1 (191-242)||(43254677-43254728)
chr1 (191-242)||(50395091-50395142)
chr1 (213-242)||(15317455-15317484)
chr1 (108-140)||(1828361-1828393)
[»] scaffold0088 (1 HSPs)
scaffold0088 (54-242)||(52835-53024)
[»] scaffold0006 (3 HSPs)
scaffold0006 (54-242)||(152023-152211)
scaffold0006 (54-141)||(64575-64662)
scaffold0006 (214-242)||(64662-64690)
[»] chr3 (29 HSPs)
chr3 (54-242)||(16496088-16496276)
chr3 (54-242)||(11383310-11383498)
chr3 (54-242)||(54792833-54793021)
chr3 (54-163)||(36164971-36165080)
chr3 (1-163)||(35437045-35437204)
chr3 (11-162)||(12157811-12157958)
chr3 (166-242)||(50771227-50771303)
chr3 (166-242)||(52462913-52462989)
chr3 (172-242)||(40827021-40827091)
chr3 (166-242)||(48976882-48976958)
chr3 (166-242)||(50741550-50741626)
chr3 (166-242)||(11597943-11598019)
chr3 (166-242)||(16341853-16341929)
chr3 (166-242)||(51248547-51248623)
chr3 (175-242)||(48521011-48521078)
chr3 (166-238)||(32755718-32755790)
chr3 (166-242)||(55294760-55294835)
chr3 (166-231)||(54512992-54513057)
chr3 (166-238)||(21699549-21699621)
chr3 (54-130)||(26035988-26036064)
chr3 (166-238)||(35087818-35087890)
chr3 (166-238)||(6104107-6104179)
chr3 (166-242)||(49113264-49113339)
chr3 (166-242)||(52853424-52853500)
chr3 (166-231)||(31368996-31369061)
chr3 (54-130)||(15315444-15315520)
chr3 (191-242)||(5252379-5252430)
chr3 (191-242)||(39796478-39796529)
chr3 (1-42)||(26035905-26035946)
[»] chr5 (39 HSPs)
chr5 (54-242)||(9702417-9702606)
chr5 (59-242)||(3210071-3210254)
chr5 (1-163)||(290720-290879)
chr5 (166-242)||(10512342-10512418)
chr5 (166-242)||(20350087-20350163)
chr5 (166-242)||(27066038-27066114)
chr5 (166-242)||(35539897-35539973)
chr5 (166-242)||(41780993-41781069)
chr5 (166-242)||(34374357-34374434)
chr5 (166-242)||(1851938-1852014)
chr5 (166-242)||(3028919-3028995)
chr5 (166-242)||(3150582-3150658)
chr5 (166-242)||(20758111-20758187)
chr5 (166-238)||(20995922-20995994)
chr5 (166-237)||(3397117-3397188)
chr5 (168-239)||(21030276-21030347)
chr5 (166-242)||(4882437-4882513)
chr5 (54-130)||(9809996-9810072)
chr5 (54-130)||(12702237-12702313)
chr5 (166-242)||(33706757-33706833)
chr5 (166-241)||(19448169-19448244)
chr5 (54-130)||(12763252-12763329)
chr5 (166-238)||(2195334-2195406)
chr5 (166-238)||(7285846-7285918)
chr5 (54-130)||(7863704-7863780)
chr5 (166-238)||(26321053-26321125)
chr5 (166-238)||(33611118-33611190)
chr5 (166-242)||(17996730-17996806)
chr5 (166-238)||(33929963-33930035)
chr5 (166-239)||(38934630-38934703)
chr5 (166-238)||(30689478-30689550)
chr5 (191-242)||(31295677-31295728)
chr5 (64-158)||(13353626-13353720)
chr5 (191-242)||(19395521-19395572)
chr5 (1-42)||(3210015-3210056)
chr5 (1-42)||(9809912-9809953)
chr5 (1-42)||(12702152-12702193)
chr5 (1-42)||(12763168-12763209)
chr5 (179-239)||(8349698-8349758)
[»] chr2 (29 HSPs)
chr2 (54-242)||(17025826-17026015)
chr2 (54-242)||(17092011-17092200)
chr2 (119-242)||(17037503-17037626)
chr2 (12-163)||(14753423-14753571)
chr2 (166-241)||(33907463-33907538)
chr2 (166-242)||(33663776-33663852)
chr2 (54-141)||(10821147-10821234)
chr2 (11-167)||(16884033-16884187)
chr2 (11-167)||(17041723-17041877)
chr2 (166-242)||(26827734-26827810)
chr2 (166-238)||(35286322-35286394)
chr2 (166-241)||(4811782-4811857)
chr2 (166-242)||(11706847-11706923)
chr2 (166-242)||(18092704-18092780)
chr2 (166-242)||(45205000-45205076)
chr2 (166-238)||(21097937-21098009)
chr2 (166-238)||(26821858-26821930)
chr2 (166-238)||(36633068-36633140)
chr2 (166-242)||(42885610-42885686)
chr2 (170-242)||(45398976-45399048)
chr2 (171-242)||(28379990-28380061)
chr2 (166-242)||(1514971-1515048)
chr2 (166-242)||(30570531-30570608)
chr2 (166-242)||(30572411-30572488)
chr2 (166-238)||(16724331-16724403)
chr2 (2-42)||(10821065-10821105)
chr2 (191-242)||(1993075-1993126)
chr2 (191-242)||(14323334-14323385)
chr2 (191-242)||(28502385-28502436)
[»] chr6 (24 HSPs)
chr6 (1-163)||(1932129-1932289)
chr6 (1-159)||(4425702-4425857)
chr6 (166-242)||(22373829-22373905)
chr6 (166-242)||(17939705-17939781)
chr6 (166-242)||(14831668-14831744)
chr6 (171-242)||(34321276-34321347)
chr6 (166-242)||(4424668-4424744)
chr6 (166-242)||(18311974-18312050)
chr6 (166-238)||(18598974-18599046)
chr6 (166-238)||(1073251-1073323)
chr6 (54-130)||(5753282-5753358)
chr6 (54-130)||(8614872-8614948)
chr6 (166-242)||(30044391-30044467)
chr6 (166-238)||(34856139-34856211)
chr6 (166-238)||(2521352-2521424)
chr6 (166-238)||(21799729-21799801)
chr6 (166-238)||(25540260-25540332)
chr6 (54-130)||(33318824-33318900)
chr6 (183-242)||(35041276-35041335)
chr6 (166-242)||(33321442-33321516)
chr6 (166-238)||(14887926-14887998)
chr6 (197-242)||(15275841-15275886)
chr6 (166-205)||(7222530-7222569)
chr6 (191-242)||(13456858-13456909)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-163)||(61503-61662)
[»] scaffold0242 (1 HSPs)
scaffold0242 (166-242)||(3399-3475)
[»] scaffold0079 (1 HSPs)
scaffold0079 (166-242)||(10590-10666)
[»] scaffold0045 (1 HSPs)
scaffold0045 (171-242)||(12916-12987)
[»] scaffold0016 (1 HSPs)
scaffold0016 (173-242)||(100798-100867)
[»] scaffold0249 (2 HSPs)
scaffold0249 (54-130)||(25102-25178)
scaffold0249 (1-42)||(25010-25051)
[»] scaffold0236 (1 HSPs)
scaffold0236 (166-242)||(26684-26760)
[»] scaffold0110 (1 HSPs)
scaffold0110 (166-242)||(49215-49291)
[»] scaffold0171 (1 HSPs)
scaffold0171 (166-237)||(29978-30049)
[»] scaffold0047 (1 HSPs)
scaffold0047 (166-238)||(26340-26412)
[»] scaffold0005 (1 HSPs)
scaffold0005 (166-238)||(10131-10203)
[»] scaffold0376 (2 HSPs)
scaffold0376 (59-130)||(10970-11041)
scaffold0376 (1-42)||(10873-10914)
[»] scaffold0122 (1 HSPs)
scaffold0122 (166-231)||(628-693)
[»] scaffold0010 (1 HSPs)
scaffold0010 (166-210)||(120102-120146)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 29434223 - 29433982
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatc 100  Q
    |||||||| ||||||||||||||||||||||||||| |||||           |||| |||||||||||||||||||||||||||| |||||||| ||||    
T  29434223 cacaaactcagatattctaaataaatcacttttactgtattttaaagaaaaaactttgttataaaggagaaatgagcaaattaagggaaatagctgcatc 29434124  T
Q  101 tttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctcagctatatgtacatttctaaaacatttaccaaagcatt 200  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29434123 tttctaagaaattgatgttgttcataaatatgaaaatcaagcaagcatattacacaaatctcatctatatgtacatttctaaaacatttaccaaagcatt 29434024  T
Q  201 ataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  29434023 ataaaaatttgttgtaagaaaatagcatgttctattttgttc 29433982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 39445153 - 39444964
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||     
T  39445153 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtgaaaatcaagcaagcatattg 39445054  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  39445053 cacaaatctcaactatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtaggaaaagagcatgttctattttgttc 39444964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 12250054 - 12250243
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||| |||||||||||||||| ||||||||||||||||||||||     
T  12250054 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaacgtgaaaatcaagcaagcatattg 12250153  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  12250154 cacaaatctcaactatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtaggaaaagagcatgttctattttgttc 12250243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 23626199 - 23626388
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || |||||||||  ||||||||||||||||||||||||||||||||     
T  23626199 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgctgttcataaatgtgaaaatcaagcaagcatattg 23626298  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  23626299 cacaaatctcaggtatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtgggaaaagagcatgttctattttgttc 23626388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 39204762 - 39204574
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| ||||||||||||||||| ||||||||||||||||  | ||| || |||| ||||||||| ||||||||||||||||||||||||||||||||| |    
T  39204762 ctttgttataaaggagaaatgaacaaattaaggaaaataattgcattttcctaagaaattgttgccgttcataaatgtgaaaatcaagcaagcatattgc 39204663  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||| ||||||||||||||    
T  39204662 acaaatatcagctatacgtacatttctaaaacatttaccaaaacattatgaagatttgatgtaggaaaagagcacgttctattttgttc 39204574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 41907900 - 41907800
Alignment:
Q  63 aaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctc 162  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||  ||||||||||| ||||||||||||||||| | ||||||||||    
T  41907900 aaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgttgtttttcataaatgtcaaaatcaagcaagcatactgcacaaatctc 41907801  T
Q  163 a 163  Q
    |    
T  41907800 a 41907800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 6477461 - 6477537
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  6477461 tatatgtacatttctaaaacatttaccaaagcattataaagatttattgtaggaaaagagcatgttttattttgttc 6477537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 38993702 - 38993626
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  38993702 tatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtaggaaaagagcatgttttattttgttc 38993626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 41156658 - 41156582
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  41156658 tataagtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagaacatgttctattttgttc 41156582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 44382769 - 44382845
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  44382769 tataagtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagaacatgttctattttgttc 44382845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 44599721 - 44599645
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  44599721 tatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtaggaaaagagcatgttttattttgttc 44599645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 22333089 - 22333165
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  22333089 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 22333165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 42810905 - 42810981
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  42810905 tatatgtacatttctaaaacatttaccaaagcattataaagatttaatgtaggaaaagagcatgttttattttgttc 42810981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 22946782 - 22946854
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  22946782 tatatatacatttctaaaacatttaccaaagcattataaagatttgctggaggaaaagagcatgttctatttt 22946854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 23522625 - 23522701
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  23522625 tatatgtacatttctaaaacaattaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 23522701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 12760488 - 12760418
Alignment:
Q  172 tacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||||    
T  12760488 tacatttctaaaacatttaccaaagcattgtaaagatttgttgtaggaaaagaacatgttttattttgttc 12760418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 33424227 - 33424299
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||| ||||||    
T  33424227 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttattgtaggaaaatagcatgttttatttt 33424299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 38962188 - 38962112
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||  || |||||||||||||||| ||||||||||    
T  38962188 tatatgtacatttctaaaacatttaccaaatcattataaagatttactgcaggaaaagagcatgttttattttgttc 38962112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 38992532 - 38992456
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||  || |||||||||||||||| ||||||||||    
T  38992532 tatatgtacatttctaaaacatttaccaaatcattataaagatttactgcaggaaaagagcatgttttattttgttc 38992456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 41977478 - 41977402
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||| | |||||||||||||||||    
T  41977478 tataagtacatttctaaaacatttaccaaagcattataaagatttgctgtagaaaaataacatgttctattttgttc 41977402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 14078798 - 14078870
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  14078798 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 14078870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 45293543 - 45293615
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||||||| |||||    
T  45293543 tataagtacatttctaaaacatttaccaaagcattataaagatttgttataggaaaggaacatgttcaatttt 45293615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 2961188 - 2961262
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaa 128  Q
    |||| |||||||| ||||||||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  2961188 ctttgttataaagaagaaatgagcaaattaagggaaatagctgcatttttttaagaaattgttgtcgttcataaa 2961262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 27273252 - 27273180
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||  |||||||||| | |||||| ||||||    
T  27273252 tatatgtatatttctaaaacatttaccaaagcattataaagatttactgtaggaaaataacatgttttatttt 27273180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 19248127 - 19248051
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||  |||| |||||||||| ||||||||  ||||| |||||||||||| |||||||||||||||||    
T  19248127 tataagtacattttcaaaatatttaccaaaacattataacgatttgctgtaggaaaagaacatgttctattttgttc 19248051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 19321311 - 19321235
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||  |||| |||||||||| ||||||||  ||||| |||||||||||| |||||||||||||||||    
T  19321311 tataagtacattttcaaaatatttaccaaaacattataacgatttgctgtaggaaaagaacatgttctattttgttc 19321235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 30826474 - 30826402
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||| ||||| ||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  30826474 tatatgtacatttctaaaatatttatcaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 30826402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 41628910 - 41628834
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||  ||| | |||| | |||||| ||||||||||    
T  41628910 tatatgtacatttctaaaacatttaccaaaacattataaagatttactgttgaaaaacaacatgttttattttgttc 41628834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 3751131 - 3751054
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtagg-aaaagagcatgttctattttgttc 242  Q
    |||| ||| ||||||||||||||||||| ||||||||||| ||||| || ||| |||| | |||||||||||||||||    
T  3751131 tataagtatatttctaaaacatttaccagagcattataaagatttgctgaaggaaaaaaaacatgttctattttgttc 3751054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 16668794 - 16668838
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaattt 210  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
T  16668794 tatatatacatttctaaaacatttaccaaagcattataaagattt 16668838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 19395532 - 19395576
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaattt 210  Q
    ||||||||||||| ||||||||||| |||||||||||||| ||||    
T  19395532 tatatgtacatttataaaacatttagcaaagcattataaagattt 19395576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 6300610 - 6300661
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  6300610 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 6300661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 23966513 - 23966564
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  23966513 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 23966564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 36597941 - 36597980
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaa 205  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  36597941 tatatgtacatttcttaatcatttaccaaagcattataaa 36597980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 37029832 - 37029781
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  37029832 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 37029781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 44940436 - 44940385
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  44940436 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 44940385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 27244464 - 27244530
Alignment:
Q  79 aattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaag 145  Q
    ||||| ||||||||| | ||||||||||| |||||| || | || ||||||||| ||||||||||||    
T  27244464 aattatggaaaatagttgcatctttctaagaaattggtgccttttataaatgtggaaatcaagcaag 27244530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 2961100 - 2961140
Alignment:
Q  2 acaaacttagatattctaaataaatcacttttactatattt 42  Q
    |||||||  |||||||||||||||||||||||||| |||||    
T  2961100 acaaactcggatattctaaataaatcacttttactgtattt 2961140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 42244728 - 42244916
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||     
T  42244728 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaagaaattgctgtcattcataaatgtgaaaatcaagcaagcatattat 42244827  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  42244828 acaaatcttagctatatgtacatttctaaaacatttaccaaaacattataaaaatttattgtaggaaaagagcatgttctattttgttc 42244916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 38434421 - 38434610
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||     
T  38434421 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgccgttcataaatgtgaaaatcaagcaagcatattg 38434520  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  38434521 cacaaatctcagctatatgtacatttctataacatttaccaaagcattataaagatttgatgtgggaaaagagcatgttctattttgttc 38434610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 42996840 - 42996651
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||| ||||||||||||||||||| |||||||||||||||||||     
T  42996840 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtcaaaatcaagcaagcatattg 42996741  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  42996740 cacaaatctcaactatatttacatttctaaaacatttaccaaagcattataaagatttgatgtaggaaaagagcatgttctattttgttc 42996651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 4481283 - 4481447
Alignment:
Q  78 aaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctcagctatatgtacatt 177  Q
    ||||||||| ||||| || ||||||||||| |||||  || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4481283 aaattaagggaaataactgcatctttctaagaaattactgccgttcataaatgtgaaaatcaagcaagcatattgcacaaatctcagctatatgtacatt 4481382  T
Q  178 tctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  4481383 tctaaaacatttaccaaagcattataaagatttgttgttggaaaagagcatgttctattttgttc 4481447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 9226124 - 9226272
Alignment:
Q  12 atattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaa 111  Q
    |||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||| ||||| || ||||||||||| |||    
T  9226124 atattctaaataaatcacttttactatatttttaaaaaa---ctttgttataaaggagaaatgagcaaattaagggaaataactgcatctttctaagaaa 9226220  T
Q  112 ttgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctca 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9226221 ttgttgtcgttcataaatgtgaaaatcaagcaagcatattgcacaaatctca 9226272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 42827331 - 42827406
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgtt 241  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42827331 tatatatacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgtt 42827406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 17478167 - 17478091
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  17478167 tatatgtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 17478091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 17575047 - 17575123
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  17575047 tatatgtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 17575123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 17482610 - 17482534
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  17482610 tatatatacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 17482534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 17570604 - 17570680
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  17570604 tatatatacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 17570680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 9149641 - 9149565
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||    
T  9149641 tataagtacatttctaaaacatttaccaaagcattataaagatttgttataggaaaagaacatgttctattttgttc 9149565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 11500138 - 11500062
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||    
T  11500138 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaagagcatattttattttgttc 11500062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 17470011 - 17469935
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  17470011 tatatgtacatttctaaaacaattaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 17469935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 17583203 - 17583279
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  17583203 tatatgtacatttctaaaacaattaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 17583279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 33638660 - 33638736
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||    
T  33638660 tataagtacatttctaaaacatttaccaaagcattataaagatttgctgtgggaaaagaacatgttctattttgttc 33638736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 8925888 - 8925962
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgt 240  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||| ||||||||    
T  8925888 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttattgtaggaaaatagcatgttttattttgt 8925962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 23299707 - 23299783
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||  |||||||||||| |||||||||||||||||    
T  23299707 tataagtacatttctaaaacatttaccaaaacattataaatatttcctgtaggaaaagaacatgttctattttgttc 23299783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 27735034 - 27735109
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||    
T  27735034 tataagtacatttctaaaacatttaccaaagcat-ataaagatttgttgtaggaaaagaacatgttttattttgttc 27735109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 33031075 - 33030999
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| | ||| ||||||    
T  33031075 tatatgtacatttctaaaacatttatcaaaacattataaagatttgttgtaggaaaagagcatgatttatgttgttc 33030999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 34130615 - 34130539
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||| || |||| ||||||||||||||||||||||    
T  34130615 ctttgttataaaggagaaatgagcaaattaagaaaaatagctgcattttcctaagaaattgttgtcgttcataaatg 34130539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 42918102 - 42918026
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||| |||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  42918102 tataagtacattactaaaagatttaccaaagcattataaagatttgttgtagtaaaagaacatgttctattttgttc 42918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 23766423 - 23766495
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  23766423 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 23766495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 47174728 - 47174656
Alignment:
Q  170 tgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||| | ||  ||||| ||||||| ||||||||||||||||    
T  47174728 tgtacatttctaaaacatttaccaaagcattataaagacttactgtagaaaaagagaatgttctattttgttc 47174656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 41262324 - 41262405
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttcgagat 247  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||   ||||||||||| ||| || |||||||||| ||||    
T  41262324 tatatgtacatttctaaaatatttaccaaaacattataaagatttaccgtaggaaaagaacatattttattttgttcaagat 41262405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 5962975 - 5962931
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaattt 210  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  5962975 tatatgtacatttctaaaacatttaccaaagcattataaagattt 5962931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 14309132 - 14309060
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||   ||||||||| |||||||| ||||||    
T  14309132 tatatgtacatttctaaaacatttaccaaaacattgtaaagatttaccgtaggaaaatagcatgttttatttt 14309060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 19521404 - 19521328
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| || |||| |||||||||| ||||||||||||||| ||||  | ||||||||||||||||| ||||||||||    
T  19521404 tatatatatatttataaaacatttcccaaagcattataaagatttactataggaaaagagcatgttttattttgttc 19521328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 42687831 - 42687787
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaattt 210  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  42687831 tatatgtacatttctaaaacatttaccaaagcattataaatattt 42687787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 19124125 - 19124047
Alignment:
Q  62 taaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaa 140  Q
    |||| |||||||||||||||||||| | |||||  ||| ||||||||| |||||||||||| |||| ||| ||||||||    
T  19124125 taaatgagaaatgagcaaattaagggagatagccgcatttttctaaaagattgttgtcgtttataattgtaaaaatcaa 19124047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 19123129 - 19123034
Alignment:
Q  62 taaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaa 158  Q
    ||||||| ||||||||||||||||| | |||||  ||| ||||||| | | | |||||||| |||||| |||||||||| |||| ||||| ||||||    
T  19123129 taaaggataaatgagcaaattaagggagatagc-gcatttttctaagagaatattgtcgtttataaatatgaaaatcaaacaaggatattgcacaaa 19123034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 47573462 - 47573513
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  47573462 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 47573513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42244673 - 42244714
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||  |||||||||||||||||||||||||| |||||    
T  42244673 cacaaactcggatattctaaataaatcacttttactgtattt 42244714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 1484788 - 1484744
Alignment:
Q  62 taaaggagaaatgagcaaattaaggaaaatagctacatctttcta 106  Q
    ||||||| |||||||||||||| |||||||| |||||| ||||||    
T  1484788 taaaggaaaaatgagcaaattatggaaaataactacatatttcta 1484744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 3839248 - 3839436
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  3839248 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgttgttgttcataaatgtgaaaatcaagcaagcatattac 3839347  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  3839348 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgctataggaaaagagcatgttttattttgttc 3839436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 26870171 - 26870360
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||     
T  26870171 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtgaaaatcaagcaagcatattg 26870270  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  26870271 cacaaatctcaactatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtaggaaaagagcatgttctattttgttc 26870360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 7643787 - 7643863
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  7643787 tatatgtacatttctaaaacatttacctaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 7643863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 28973356 - 28973280
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  28973356 tatatgtacatttctaaaacatttaccaaagcattataaagatttgttgtatgaaaagagcatgttttattttgttc 28973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 1944825 - 1944738
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaag 141  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||| ||||||| |||||||||||||||||||||||||||||||||    
T  1944825 ctttgttataaaggagaaatgagcaaattaaggcaaatagccgcatttttctaagaaattgttgtcgttcataaatgtgaaaatcaag 1944738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 8531110 - 8531034
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  8531110 tataagtacatttctaaaacatttaccaaaacattataaagatttgttgtaggaaaagaacatgttctattttgttc 8531034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 38008138 - 38008062
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  38008138 tatatgtacatttttaaaacatttaccaaagcattataaagatttgctgtaggaaaagagcatgttttattttgttc 38008062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 2776571 - 2776495
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  2776571 tatatgtacatttctaaaacaattaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 2776495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 17740334 - 17740258
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||    
T  17740334 tataagtacatttctaaaacatttaccaaagcattataaagatttgctgtaggaaaagaacatattctattttgttc 17740258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 19831392 - 19831468
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  19831392 tatatgtacatttctaaaacatttaccaaaacattataaagatttactgtaggaaaagagcatgttttattttgttc 19831468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 22116046 - 22116122
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  22116046 tatatgtacatttctaaaacaattaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 22116122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 28135060 - 28135136
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  28135060 tatatgtacatttctaaaacatttaccaaaacattataaagatttactgtaggaaaagagcatgttttattttgttc 28135136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 39742741 - 39742817
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||| ||||||||||    
T  39742741 tatatgtacatttctaaaacatttaccaaagcattataaagatttaccgtaggaaaagagcatgttttattttgttc 39742817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 53342703 - 53342627
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||    
T  53342703 tatatgtacatttctaaaacatttaccaaagcattataaagatttaatgtaggaaaagagcatattttattttgttc 53342627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 41984235 - 41984305
Alignment:
Q  172 tacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||    
T  41984235 tacatttctaaaacatttaccaaagcattataaagatttgctgtacgaaaagagcatgttctatcttgttc 41984305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 36857381 - 36857308
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttg 239  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||| |||||||    
T  36857381 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaatagcatgttttattttg 36857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 5272270 - 5272342
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||| ||||||    
T  5272270 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttattgtaggaaaatagcatgttttatttt 5272342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 21353378 - 21353302
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||   |||||||||||||||||| ||||||||||    
T  21353378 tatatgtacatttctaaaacaattaccaaagcattataaagatttaccgtaggaaaagagcatgttttattttgttc 21353302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 54331638 - 54331710
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||| ||||||    
T  54331638 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaatagcatgttttatttt 54331710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 13628347 - 13628270
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtag-gaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||  ||||||||||||| ||||||||||    
T  13628347 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtagaaaaaagagcatgttttattttgttc 13628270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 35495538 - 35495614
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||||| |||||| ||||||||||    
T  35495538 tatatgtacatttctaaaacatttaccaacgcattataaagatttaccgtaggaaaagaacatgttttattttgttc 35495614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 47557420 - 47557496
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| |||||||||||||| ||||||||||||||||| || ||||||||| ||||||||  ||||||||||||||||    
T  47557420 tataagtacatttctaaaatatttaccaaagcattatgaagatttgttgtgggaaaagaatatgttctattttgttc 47557496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 15650665 - 15650739
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaa 128  Q
    |||| |||||||| ||||||||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  15650665 ctttgttataaagaagaaatgagcaaattaagggaaatagctgcatttttttaagaaattgttgtcgttcataaa 15650739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 40622442 - 40622377
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgtt 231  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  40622442 tataagtacatttctaagacatttaccaaagcattataaagatttgctgtaggaaaagaacatgtt 40622377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 14829506 - 14829578
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||| |||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  14829506 tatatgtatatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 14829578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 33502992 - 33503068
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||  |||| | |||||| ||||||||||    
T  33502992 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtataaaaacaacatgttttattttgttc 33503068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 34056558 - 34056630
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||| |||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  34056558 tatatgtatatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 34056630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 37701592 - 37701670
Alignment:
Q  166 tatatgtacatttctaaaacat--ttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||| |||||||||||||||  |||||||||||||||||| |||| ||||||||||||| ||||||  |||||||||    
T  37701592 tatatgcacatttctaaaacatatttaccaaagcattataaagatttattgtaggaaaagaacatgtttaattttgttc 37701670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 17699465 - 17699395
Alignment:
Q  172 tacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||| ||||   ||| |||||||||||||| ||||| ||||    
T  17699465 tacatttctaaaacatttaccaaagcattataaagatttaccgtaagaaaagagcatgttttatttcgttc 17699395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 55998707 - 55998777
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatt 236  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||  ||||||||||| ||||||| ||||    
T  55998707 tatatatacatttctaaaacatttaccaaaacattataaagatttactgtaggaaaagtgcatgttttatt 55998777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3839187 - 3839228
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  3839187 cacaaacttggatattctaaataaatcacttttactgtattt 3839228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 740430 - 740481
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  740430 ccaaagcattataaagatatgctgtagaaaaagggcatgttctattttgttc 740481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 15520985 - 15520934
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  15520985 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 15520934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 23479195 - 23479156
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaa 205  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  23479195 tatatgtacatttataaaacatttaccaaagcattgtaaa 23479156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 35828742 - 35828835
Alignment:
Q  62 taaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacac 155  Q
    ||||||| |||| | |||||||||| | |||| | ||| ||||||| | |||||||| | | |||||||||| ||| ||| |||||||||||||    
T  35828742 taaaggaaaaataatcaaattaagggagataggtgcatttttctaagagattgttgttgattataaatgtgagaattaagtaagcatattacac 35828835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 1944738 - 1944710
Alignment:
Q  214 gtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||    
T  1944738 gtaggaaaagagcatgttctattttgttc 1944710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 6229676 - 6229636
Alignment:
Q  111 attgttgtcgttcataaatgtgaaaatcaagcaagcatatt 151  Q
    |||| ||||||| |||||||||||||||||| |||||||||    
T  6229676 attgctgtcgtttataaatgtgaaaatcaagtaagcatatt 6229636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 15650577 - 15650617
Alignment:
Q  2 acaaacttagatattctaaataaatcacttttactatattt 42  Q
    |||||||  |||||||||||||||||||||||||| |||||    
T  15650577 acaaactcggatattctaaataaatcacttttactgtattt 15650617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 12714872 - 12714684
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| ||| |||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  12714872 ctttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttctatgaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgc 12714773  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||    
T  12714772 acaaatctcagctatatgtacatttataaaacatttaccaaagcattataaagatttgctgtaggaaaagaacatgttctatttggttc 12714684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 28565571 - 28565759
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| |||  ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  28565571 ctttgttataaaggagaaatgagcaaattaagggaaaaggctacatttttctatgaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgc 28565670  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  28565671 acaaatctcagctatatgtacatttttaaaacatttaccaaatcattataaagatttgctgtaggaaaagagcatgttctatttggttc 28565759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 28631708 - 28631519
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||     
T  28631708 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattg 28631609  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||    
T  28631608 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtgggaaaagagcatattctattttgttc 28631519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 13662261 - 13662449
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| ||| |||| ||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  13662261 ctttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgc 13662360  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||    
T  13662361 acaaatctcagctatatgtacatttttaaaacatttaccaaagcattataaagatttgctgtaggaaaatagcatgttctatttggttc 13662449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 17671735 - 17671663
Alignment:
Q  170 tgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  17671735 tgtacatttctaaaacatttaccaaagcattataaagatttgctgtaggaaaagagcatgttctattttgttc 17671663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 45005015 - 45004939
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45005015 tatatatatatttctaaaacatttatcaaagcattataaagatttgttgtaggaaaagagcatgttctattttgttc 45004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 47135678 - 47135602
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  47135678 tataagtacatttctaaaacatttaccaaaacattataaagatttgttgtaggaaaagaacatgttctattttgttc 47135602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 50561324 - 50561248
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  50561324 tataagtacatttctaaaatatttaccaaagcattataaagatttgttgtaggaaaagaacatgttctattttgttc 50561248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 48340612 - 48340536
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| ||||||||||    
T  48340612 tatatgtacatttctaaaacatttatcaaagcatcataaagatttgttgtaggaaaagagcttgttttattttgttc 48340536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 52310117 - 52310041
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||    
T  52310117 tataagtacatttctaaaacatttaccaaaacattataaagatttgttgtagaaaaagaacatgttctattttgttc 52310041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 16031571 - 16031647
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| |||||||||||||||||||||||| ||||||| | ||||| |||||||||||| |||||||||||||||||    
T  16031571 tatatatacatttctaaaacatttaccaaaacattatagagatttgctgtaggaaaagaacatgttctattttgttc 16031647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 51965700 - 51965776
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| |||||||| |||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||    
T  51965700 tataagtacatttttaaaacatttaccaaagcattataaagatctgttgtagcaaaagaacatgttctattttgttc 51965776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 36681512 - 36681450
Alignment:
Q  180 taaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  36681512 taaaacatttatcaaagcattataaagatttgttgtaggaaaagaacatgttctattttgttc 36681450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 38845215 - 38845296
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttcgagat 247  Q
    ||||| ||||||| ||||| |||||||||||||||||||| ||||  ||||||||||||||||||| |||||||||| ||||    
T  38845215 tatatatacatttttaaaatatttaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttcaagat 38845296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 18814502 - 18814430
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  18814502 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 18814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 34687870 - 34687798
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  34687870 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 34687798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 34692398 - 34692326
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||| || ||||||    
T  34692398 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaatagcatattttatttt 34692326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 44406643 - 44406567
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| || |  |||||||||||| |||||| ||||||||||    
T  44406643 tatatgtacatttctaaaacaattaccaaagcattataaagatctactgtaggaaaagatcatgttttattttgttc 44406567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 31619972 - 31619900
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||| |||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  31619972 tatatgtatatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 31619900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 41830017 - 41830089
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||   ||||||||| |||||||| ||||||    
T  41830017 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttaccgtaggaaaatagcatgttttatttt 41830089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 12245831 - 12245880
Alignment:
Q  189 taccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  12245831 taccaaagcattataaagatttgttggaggaaaagagcatgttctatttt 12245880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 15317545 - 15317492
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaa 107  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  15317545 ctttgttataaaggagaaatgagcaaattaaggaaaatagctgcatttttctaa 15317492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 24294787 - 24294736
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  24294787 ccaaagcattataaagatttgctgtagaaaaagagcatgttctattttgttc 24294736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 39760143 - 39760193
Alignment:
Q  192 caaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  39760143 caaagcattataaagatttgctgtagaaaaagagcatgttctattttgttc 39760193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 41962896 - 41962961
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgtt 231  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||  |||||||||| | ||||||    
T  41962896 tatatgtacatttctaaaacatttaccaaagcatcgtaaagatttactgtaggaaaataacatgtt 41962961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 52521585 - 52521620
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcatta 201  Q
    ||||||||||||||||||||||||||||||||||||    
T  52521585 tatatgtacatttctaaaacatttaccaaagcatta 52521620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 43254677 - 43254728
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  43254677 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 43254728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 50395091 - 50395142
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  50395091 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 50395142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 15317484 - 15317455
Alignment:
Q  213 tgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||||    
T  15317484 tgtaggaaaagagcatgttctattttgttc 15317455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 1828393 - 1828361
Alignment:
Q  108 aaaattgttgtcgttcataaatgtgaaaatcaa 140  Q
    ||||||||||||||| |||||||||||||||||    
T  1828393 aaaattgttgtcgtttataaatgtgaaaatcaa 1828361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 52835 - 53024
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||     
T  52835 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtgaaaatcaagcaagcatattg 52934  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  52935 cacaaatctcaactatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtaggaaaagagcatgttctattttgttc 53024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 152023 - 152211
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| ||| |||| ||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  152023 ctttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgc 152122  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||    
T  152123 acaaatctcagctatatgtacatttttaaaacatttaccaaagcattataaagatttgctgtaggaaaatagcatgttctatttggttc 152211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 64575 - 64662
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaag 141  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||| ||||||| |||||||||||||||||||||||||||||||||    
T  64575 ctttgttataaaggagaaatgagcaaattaaggcaaatagccgcatttttctaagaaattgttgtcgttcataaatgtgaaaatcaag 64662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 64662 - 64690
Alignment:
Q  214 gtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||    
T  64662 gtaggaaaagagcatgttctattttgttc 64690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 16496276 - 16496088
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| ||| |||| ||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  16496276 ctttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgc 16496177  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||    
T  16496176 acaaatctcagctatatgtacatttttaaaacatttaccaaagcattataaagatttgctgtaggaaaatagcatgttctatttggttc 16496088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 11383498 - 11383310
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| ||||| || || || ||||| ||||||||||| ||||||||||||||||||||||||||||||| |    
T  11383498 ctttgttataaaggagaaatgagcaaattaagggaaataactgcacctctctaagaaattgttgtccttcataaatgtgaaaatcaagcaagcatattgc 11383399  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||| ||||||||||||||  |||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  11383398 acaaatttcagctatatgtaccattctaaaatatttaccaaagcattataaagctttgttgtaggaaaagaacatgttctattttgttc 11383310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 54792833 - 54793021
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| ||||||| |||||||||||||||||||| ||| |||| ||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  54792833 ctttgttataaaagagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgc 54792932  T
Q  154 acaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
      |||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||   ||||||||||| |||||||||||| ||||    
T  54792933 gtaaatctcagctatatgtacatttcgaaagcatttatcaaagcattataaagatttaccgtaggaaaagaacatgttctatttggttc 54793021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 36164971 - 36165080
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattac 153  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  36164971 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaaaaaattgttgtcgttcataaatgtgaaaattaagcaagcatattgc 36165070  T
Q  154 acaaatctca 163  Q
    ||||||||||    
T  36165071 acaaatctca 36165080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 35437204 - 35437045
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatc 100  Q
    ||||||||  |||||||||||||||||| |||||||||||||           |||| |||||||||| ||||||||||||||||| |||||||| ||||    
T  35437204 cacaaactcggatattctaaataaatcatttttactatatttttaaaaaa---ctttgttataaaggaaaaatgagcaaattaagggaaatagctgcatc 35437108  T
Q  101 tttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctca 163  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35437107 tttctaagaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgcacaaatctca 35437045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 12157811 - 12157958
Alignment:
Q  11 gatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaa 110  Q
    ||||||||||||||||||||||||||||||||            ||| |||||||||||||||||||||||||| | ||||| || ||||||||||| ||    
T  12157811 gatattctaaataaatcacttttactatatttttaaaaaa----tttgttataaaggagaaatgagcaaattaaaggaaataactgcatctttctaagaa 12157906  T
Q  111 attgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctc 162  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  12157907 attgttgtcgttcctaaatgtgaaaatcaagcaaacatattgcacaaatctc 12157958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 50771227 - 50771303
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  50771227 tatatgtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 50771303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 52462913 - 52462989
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  52462913 tataagtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttctatgttgttc 52462989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 40827021 - 40827091
Alignment:
Q  172 tacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  40827021 tacatttctaaaacatttaccaaagcattataaacatttgttgtaggaaaagaacatgttctattttgttc 40827091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 48976958 - 48976882
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  48976958 tatatgtacatttataaaacatttaccaaagcattataaaaatttactgtaggaaaagagcatgttttattttgttc 48976882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 50741626 - 50741550
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  50741626 tatatatacatttctaaaacatttaccaaaacattataaagatttgttgtaggaaaagagcatgttttattttgttc 50741550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 11597943 - 11598019
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  11597943 tataagtacattactaaaacatttaccaaagcattataaagatttgctgtaggaaaagaacatgttctattttgttc 11598019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 16341929 - 16341853
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||| ||||||||||    
T  16341929 tatatgtacatttctaaaacatttacaaaagcattataaagatttgctgtaggaaaatagcatgttttattttgttc 16341853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 51248623 - 51248547
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||| ||||||||||    
T  51248623 tatatgtacatttctaaaacatttaccaaagcattataaagattcactgtaggaaaagagcatgttttattttgttc 51248547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 48521011 - 48521078
Alignment:
Q  175 atttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  48521011 atttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagaacatcttctattttgttc 48521078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 32755790 - 32755718
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||| ||||||    
T  32755790 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaatagcatgttttatttt 32755718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 55294760 - 55294835
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||    
T  55294760 tataagtacatttctaaaacatttaccaaagcat-ataaagatttgttgtaggaaaagaacatgttttattttgttc 55294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 54513057 - 54512992
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgtt 231  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  54513057 tatacgtacatttctaaaacatttaccaaagtattataaagatttgatgtaggaaaagagcatgtt 54512992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 21699549 - 21699621
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||  | ||||||||||||||||| ||||||    
T  21699549 tatatgtacatttctaaaacatttaccaaaacattataaagatttactataggaaaagagcatgttttatttt 21699621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 26035988 - 26036064
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| || |||| |||||||| |||||||||||||    
T  26035988 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttttcgttcataaatg 26036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 35087818 - 35087890
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| | |||||| ||||||    
T  35087818 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaataacatgttttatttt 35087890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6104107 - 6104179
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  | |||||||| |||||||| ||||||    
T  6104107 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactataggaaaatagcatgttttatttt 6104179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 49113339 - 49113264
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||| |||||| ||||||||| |||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  49113339 tatatgtacattcctaaaatatttaccaa-gcattataaagatttactgtaggaaaagagcatgttttattttgttc 49113264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 52853424 - 52853500
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   ||||||||| |  ||||| ||||||||||    
T  52853424 tatatgtacatttctaaaacatttaccaaagcattataaagatttaccgtaggaaaatattatgttttattttgttc 52853500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 31368996 - 31369061
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgtt 231  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| | ||||||    
T  31368996 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaataacatgtt 31369061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 15315444 - 15315520
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||| |||| ||||||||| |||  |||||||| ||| || |||| |||||| |||||||||||||||    
T  15315444 ctttgttataaagaagaactgagcaaataaagagaaatagctgcattttcctaagaaattgctgtcgttcataaatg 15315520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 5252379 - 5252430
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  5252379 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 5252430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 39796478 - 39796529
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  39796478 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 39796529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26035905 - 26035946
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||  |||||||||||||||||||||||||| |||||    
T  26035905 cacaaactcggatattctaaataaatcacttttactgtattt 26035946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 9702606 - 9702417
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||| | ||||| || ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||     
T  9702606 ctttgttataaagaagaaatgagcaaattaaaggaaatatctgcatttttcttaagaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattg 9702507  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||    
T  9702506 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaagatttgatgtgggaaaagagcatattctattttgttc 9702417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 3210071 - 3210254
Alignment:
Q  59 ttataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaa 158  Q
    |||||||||||||||||||||||||||| |||||  | ||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3210071 ttataaaggagaaatgagcaaattaagggaaataattgcattttcctaagaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgcacaaa 3210170  T
Q  159 tctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    | ||||||||||||| ||||| |||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||    
T  3210171 tatcagctatatgtatatttcaaaaacatttaccaaagcattatgaagatttgatgtaggaaaagagcacgttctattttgttc 3210254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 290879 - 290720
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatc 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||           |||| |||||||||||||||||||||||||||| |||||||| ||||    
T  290879 cacaaacttggatattctaaataaatcacttttacaatatttttaaaaaa---ctttgttataaaggagaaatgagcaaattaagggaaatagctgcatc 290783  T
Q  101 tttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctca 163  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||| |||||||||||    
T  290782 tttctaagaaattgatgccgttcataaatgtgaaaatcaagcaagcatattgcacaaatctca 290720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 10512342 - 10512418
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  10512342 tatatgtacatttataaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 10512418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 20350163 - 20350087
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  20350163 tatatatacatttctaaaatatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 20350087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 27066114 - 27066038
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||    
T  27066114 tatatgtacatttctaaaacatttaccaaagcattataaagatttattgtaggaaaagaacatgttttattttgttc 27066038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 35539897 - 35539973
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||    
T  35539897 tatatgtacatttctaaaacatttaccaaagcattataaagatttgttgtaagaaaagaacatgttttattttgttc 35539973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 41781069 - 41780993
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  41781069 tatatatatatttctaaaacatttaccaaagcattataaagatttgctgtaggaaaagagcatgttctattttgttc 41780993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 34374357 - 34374434
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagc-attataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||    
T  34374357 tatatgtacatttctaaaacatttaccaaagccattataaagatttgatgtaggaaaagagcatgttttattttgttc 34374434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 1851938 - 1852014
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||| ||||||||||    
T  1851938 tatatgtacatttctaaaacatttaccaaagcattatagagatttactgtaggaaaagagcatgttttattttgttc 1852014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 3028995 - 3028919
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||  ||||||||||    
T  3028995 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaagagcatgtattattttgttc 3028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 3150582 - 3150658
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  3150582 tatatgtacatttctaaaacatttatcaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 3150658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 20758187 - 20758111
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  20758187 tatatgtacatttctaaaacaattaccaaagcattataaagatttactgtaggaaaagagcatgttttattttgttc 20758111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 20995922 - 20995994
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  20995922 tataagtacatttctaaaacatttaccaaagcattataaagatttgctgtagaaaaagagcatgttctatttt 20995994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 3397117 - 3397188
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattt 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||    
T  3397117 tatatgtacatttctaaaacatttaccaaagcattataaagatttattgtaggaaaatagcatgttttattt 3397188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 21030347 - 21030276
Alignment:
Q  168 tatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttg 239  Q
    |||| ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  21030347 tatgcacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaagagcatgttctattttg 21030276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 4882513 - 4882437
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||  ||||||||||||| ||||| ||||||||||    
T  4882513 tatatgtacatttctaaaacatttaccaaaacattataaagatttactgtaggaaaagagtatgttttattttgttc 4882437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 9809996 - 9810072
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| || |||| ||||||||||||||||||||||    
T  9809996 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatg 9810072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 12702237 - 12702313
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| || |||| ||||||||||||||||||||||    
T  12702237 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatg 12702313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 33706757 - 33706833
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||  ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  33706757 tataagtacatttctaaaaattttaccaaagcattataaagatttgttgtgggaaaagaacatgttctattttgttc 33706833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 19448244 - 19448169
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgtt 241  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||  ||||||||||||||||||| |||||||||    
T  19448244 tatatgtacatttctaaaacatttatcaaaatattataaaaatttactgtaggaaaagagcatgttttattttgtt 19448169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 12763252 - 12763329
Alignment:
Q  54 ctttattataaaggagaaatgagcaaa-ttaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||||||||||||||||| |||||| |||||||| ||| ||||||| ||||||||||||||||||||||    
T  12763252 ctttgttataaaggagaaatgagcaaaattaagggaaatagctgcatttttctaagaaattgttgtcgttcataaatg 12763329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 2195406 - 2195334
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  2195406 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 2195334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 7285918 - 7285846
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||| |||||||| ||||||    
T  7285918 tatatgtacatttctaaaatatttaccaaagcattataaagatttactgtaggaaaatagcatgttttatttt 7285846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 7863704 - 7863780
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| || |||| |||||| |||||||||||||||    
T  7863704 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgctgtcgttcataaatg 7863780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 26321053 - 26321125
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  26321053 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 26321125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 33611118 - 33611190
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||| || ||||||    
T  33611118 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaatagcatattttatttt 33611190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 17996806 - 17996730
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||| | | ||||  ||||||||||||||||| | ||||||||||    
T  17996806 tatatgtacatttctaaaacaattaccaaagcattaaatagatttactgtaggaaaagagcatgctttattttgttc 17996730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 33930035 - 33929963
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| ||||||||    
T  33930035 tatatatatatttctaaaacatttaccaaagcattataaagatttgctggaggaaaagaacatggtctatttt 33929963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 38934703 - 38934630
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttg 239  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||  | |||||||| |||||||| |||||||    
T  38934703 tatatgtacatttctaaaacaattaccaaagcattataaatacttactataggaaaatagcatgttttattttg 38934630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 30689550 - 30689478
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||  |||||||||| | |||||| ||||||    
T  30689550 tatatgcacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaataacatgttttatttt 30689478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 31295677 - 31295728
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||||||||||||||||||||||    
T  31295677 ccaaagcattataaagatctgctgtagaaaaagagcatgttctattttgttc 31295728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 13353720 - 13353626
Alignment:
Q  64 aaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaa 158  Q
    ||||| |||| | |||||||||| |||||| | ||| ||||||||| |||||||| | | |||||||||| ||| ||| || |||||||||||||    
T  13353720 aaggaaaaataatcaaattaagggaaatagttgcatttttctaaaagattgttgttgattataaatgtgagaattaagtaaacatattacacaaa 13353626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 19395572 - 19395521
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || | ||| ||||||||||||||||||||||||    
T  19395572 ccaaagcattataaagatctgctctagaaaaagagcatgttctattttgttc 19395521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3210015 - 3210056
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||  |||||||||||||||||||||||||| |||||    
T  3210015 cacaaactcggatattctaaataaatcacttttactgtattt 3210056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9809912 - 9809953
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||  |||||||||||||||||||||||||| |||||    
T  9809912 cacaaactcggatattctaaataaatcacttttactgtattt 9809953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12702152 - 12702193
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||  |||||||||||||||||||||||||| |||||    
T  12702152 cacaaactcggatattctaaataaatcacttttactgtattt 12702193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12763168 - 12763209
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||  |||||||||||||||||||||||||| |||||    
T  12763168 cacaaactcggatattctaaataaatcacttttactgtattt 12763209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 8349758 - 8349698
Alignment:
Q  179 ctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttg 239  Q
    |||||| ||||  ||||||||||||||| |||||||||  ||||||||||||  |||||||    
T  8349758 ctaaaagatttgacaaagcattataaaactttgttgtacaaaaagagcatgtcttattttg 8349698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 17026015 - 17025826
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||     
T  17026015 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgccgttcataaatgtgaaaatcaagcaagcatattg 17025916  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  17025915 cacaaatctcagctatatgtacatttctagaacatttaccaaagcattataaagatttgatgtgggaaaagagcatgttctattttgttc 17025826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 17092200 - 17092011
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaa-aaattgttgtcgttcataaatgtgaaaatcaagcaagcatatta 152  Q
    |||| |||||||| ||||||||||||||||||| ||||| || ||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||     
T  17092200 ctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgccgttcataaatgtgaaaatcaagcaagcatattg 17092101  T
Q  153 cacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  17092100 cacaaatctcagctatatgtacatttctagaacatttaccaaagcattataaagctttgatgtaggaaaagagcatgttctattttgttc 17092011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 17037626 - 17037503
Alignment:
Q  119 cgttcataaatgtgaaaatcaagcaagcatattacacaaatctcagctatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtagg 218  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||    
T  17037626 cgttcataaatgtgaaaatcaagcaagcatatggcacaaatctcagctatatgtacatttctagaacatttaccaaagcattataaagatttgatgtggg 17037527  T
Q  219 aaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||    
T  17037526 aaaagagcatgttctattttgttc 17037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 14753571 - 14753423
Alignment:
Q  12 atattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaa 111  Q
    |||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||    
T  14753571 atattctaaataaatcacttttactatatttttaaaaaa---ctttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaa 14753475  T
Q  112 ttgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctca 163  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  14753474 ttgttgtcgttcataaatgttaaaatcaagcaagcatattgcacaaatctca 14753423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 33907538 - 33907463
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgtt 241  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  33907538 tatatgtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgtt 33907463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 33663776 - 33663852
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  33663776 tatatgtacatttctaaaacatttaccaaagcattataaagatttgctgtaggaaaagagcatgttttattttgttc 33663852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 10821147 - 10821234
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatgtgaaaatcaag 141  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| || |||| |||||||||||||||||||||||||||||||||    
T  10821147 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatgtgaaaatcaag 10821234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 16884187 - 16884033
Alignment:
Q  11 gatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaa 110  Q
    |||||||||||||||||||||||||| |||||           |||| |||||||||||| ||||| || |||||| |||||||| ||| ||||||| ||    
T  16884187 gatattctaaataaatcacttttactgtattttaaaaaaaa--ctttgttataaaggagagatgagtaacttaagggaaatagcttcatttttctaagaa 16884090  T
Q  111 attgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctcagcta 167  Q
    ||||||  ||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  16884089 attgtttccgttcataaatgtgaaaatcaagcaagcatattgcacaaaaatcagcta 16884033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 17041877 - 17041723
Alignment:
Q  11 gatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaa 110  Q
    |||||||||||||||||||||||||| |||||           |||| |||||||||||| ||||| || |||||| |||||||| ||| ||||||| ||    
T  17041877 gatattctaaataaatcacttttactgtattttaaaaaaaa--ctttgttataaaggagagatgagtaacttaagggaaatagcttcatttttctaagaa 17041780  T
Q  111 attgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctcagcta 167  Q
    ||||||  ||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  17041779 attgtttccgttcataaatgtgaaaatcaagcaagcatattgcacaaaaatcagcta 17041723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 26827810 - 26827734
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  26827810 tatatgtacatttctaaaacatttaccaaaacattataaagatttgctgtaggaaaagagcatgttttattttgttc 26827734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 35286322 - 35286394
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  35286322 tatatgtacatttctaaaacatttaccaaagcattataaagatttgctggaggaaaagagcatgttctatttt 35286394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 4811857 - 4811782
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgtt 241  Q
    ||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  4811857 tatatatacatttctacaacatttaccaaagcgttataaagatttgttgtaggaaaagagcatgttctattttgtt 4811782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 11706923 - 11706847
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||| ||||||||||    
T  11706923 tatatgtacatttctaaaacatttaccaaaacattataaagatttgctgtatgaaaagagcatgttttattttgttc 11706847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 18092704 - 18092780
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| ||||||||||    
T  18092704 tataagtacatttctaaaacatttaccaaatcattataaagatttgttgtaggaaaagaacatgttttattttgttc 18092780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 45205000 - 45205076
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| ||||||||||    
T  45205000 tatatgtacatttctaaaacatttatcaaagcatcataaagatttgttgtaggaaaagagcttgttttattttgttc 45205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 21098009 - 21097937
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||| ||||||    
T  21098009 tatatgtacatttctaaaacatttaccaaagcattgtaaatatttattgtaggaaaatagcatgttttatttt 21097937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 26821930 - 26821858
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||| ||||||    
T  26821930 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaatagcatgttttatttt 26821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 36633068 - 36633140
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||||    
T  36633068 tataagtacatttctaaaacatttaccaaagcattataaagatttgctgtagataaagagcatgttctatttt 36633140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 42885686 - 42885610
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||| ||||||||||    
T  42885686 tatatttacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaagagcatgttttattttgttc 42885610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 45399048 - 45398976
Alignment:
Q  170 tgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| ||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  45399048 tgtacgtttctaaaatatttaccaaagcattataaagatttgctgtagtaaaagagcatgttctattttgttc 45398976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 28379990 - 28380061
Alignment:
Q  171 gtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  28379990 gtacgtttctaaaatatttaccaaagcattataaagatttgctgtagtaaaagagcatgttctattttgttc 28380061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 1514971 - 1515048
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgta-ggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||| |||| |||||||| |||||||||||||||||    
T  1514971 tataagtacatttctaaaacatttaccaaaacattataaagatttgctgtagggaaaagaacatgttctattttgttc 1515048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 30570531 - 30570608
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtag-gaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||  |||||  ||||||||||||  ||||||||||    
T  30570531 tatatgtacatttctaaaacatttaccgaagcattataaagatttactgtagaaaaaagagcatgtattattttgttc 30570608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 30572411 - 30572488
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtag-gaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||  |||||  ||||||||||||  ||||||||||    
T  30572411 tatatgtacatttctaaaacatttaccgaagcattataaagatttactgtagaaaaaagagcatgtattattttgttc 30572488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 16724331 - 16724403
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||| ||| |||  ||||  |||||||||| |||||||| ||||||    
T  16724331 tatatgtacatttctaaaacatttaccaaaggattgtaaggatttactgtaggaaaatagcatgttttatttt 16724403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 10821065 - 10821105
Alignment:
Q  2 acaaacttagatattctaaataaatcacttttactatattt 42  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  10821065 acaaacttggatattctaaataaatcacttttactgtattt 10821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 1993075 - 1993126
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  1993075 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 1993126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 14323334 - 14323385
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  14323334 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 14323385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 28502436 - 28502385
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  28502436 ccaaagcattataaagatctgctgtagaaaaagggcatgttctattttgttc 28502385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1932289 - 1932129
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatc 100  Q
    ||||||||  |||||||||||||||||||| |||||||||||           |||| |||||||| ||||||||||||||||||||||||| |||||||    
T  1932289 cacaaactcggatattctaaataaatcactgttactatatttttaaaaaaa--ctttgttataaagaagaaatgagcaaattaaggaaaataactacatc 1932192  T
Q  101 tttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctca 163  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1932191 tttctaagaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgcacaaatctca 1932129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4425857 - 4425702
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatc 100  Q
    ||||||||  |||||||||||||||||||||||||| |||||           |||| ||||||||||||||||| |||||||| |||||||||| ||||    
T  4425857 cacaaactcggatattctaaataaatcacttttactgtatttttaaaaaa---ctttgttataaaggagaaatgaacaaattaacgaaaatagctgcatc 4425761  T
Q  101 tttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaat 159  Q
    ||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  4425760 tttttaagaaattgttgttgttcataaatgtgaaaatcaagcaagcatatcacacaaat 4425702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 22373829 - 22373905
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  22373829 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgatttatgttgttc 22373905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 17939781 - 17939705
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  17939781 tatatatacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaatagcatgttttattttgttc 17939705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 14831744 - 14831668
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||    
T  14831744 tataagtacatttctaaaacatttaccaaagaattataaagatttgttgtaggaaaataacatgttctattttgttc 14831668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 34321347 - 34321276
Alignment:
Q  171 gtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||    
T  34321347 gtacatttctaaaacatttaccaaagcattataaagatttgctgtaagaaaagaacatgttctattttgttc 34321276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 4424744 - 4424668
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||| |||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||| ||||||||||    
T  4424744 tatatgcacatttctaaaacatttatcaaagcgttataaagatttattgtaggaaaagagcatgttttattttgttc 4424668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 18312050 - 18311974
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||  ||||||||||||||||||| ||||||||||    
T  18312050 tatatgtacatttctaaaacaattaccaaagcattataatgatttactgtaggaaaagagcatgttttattttgttc 18311974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 18598974 - 18599046
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||| ||||||    
T  18598974 tatatgtacatttctaaaacatttaccaaagcattataaagatttactgtaggaaaatagcatgttttatttt 18599046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 1073251 - 1073323
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  1073251 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 1073323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 5753282 - 5753358
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| ||||||||||||| |||| |||||||||||||||||| ||| || |||| ||||||||||||||||||||||    
T  5753282 ctttgttataaaggagaattgagaaaattaaggaaaatagctgcattttcctaagaaattgttgtcgttcataaatg 5753358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 8614948 - 8614872
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| || |||| |||||| |||||||||||||||    
T  8614948 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgctgtcgttcataaatg 8614872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 30044467 - 30044391
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| | |||||| ||||||||||    
T  30044467 tatatgaacatttctaaaacatttaccaaagcattataaagatttgctgtatgaaaaaaacatgttttattttgttc 30044391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 34856211 - 34856139
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  34856211 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 34856139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 2521424 - 2521352
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  2521424 tatatgcacatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 2521352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 21799801 - 21799729
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||   ||||||||| |||||||| ||||||    
T  21799801 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttaccgtaggaaaatagcatgttttatttt 21799729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 25540332 - 25540260
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||| |||||||||||||||| ||||| || ||||||||| |||||| ||||||||||| |||||||||||||    
T  25540332 tataagtacatttctaaaacagttacctaatcattataaagatttgtcgtaggaaaagaacatgttctatttt 25540260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 33318900 - 33318824
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| ||||||||||||||||| |||||||||| |||||||| ||| ||  ||| ||||||||||||||||||||||    
T  33318900 ctttgttataaaggagaaatgaacaaattaagggaaatagctgcattttcttaagaaattgttgtcgttcataaatg 33318824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 35041335 - 35041276
Alignment:
Q  183 aacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  35041335 aacaattaccaaagcattataaagatttattgtaggaaaagagcatgttttattttgttc 35041276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 33321442 - 33321516
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| |||||||||||||||||  |||||| ||||||||| ||||| |||||||||||| ||||||| |||||||||    
T  33321442 tataagtacatttctaaaacat--accaaaacattataaagatttgctgtaggaaaagaacatgttcaattttgttc 33321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 14887926 - 14887998
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  || ||||||| | |||||| ||||||    
T  14887926 tatatgtacatttctaaaacatttaccaaagcattgtaaagatttactgcaggaaaataacatgttttatttt 14887998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 15275886 - 15275841
Alignment:
Q  197 cattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  15275886 cattataaagatttgttgtaggaaaagagcatgttttattttgttc 15275841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 7222569 - 7222530
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaa 205  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  7222569 tatatgtacatttcttaaacatttaccaaagcattataaa 7222530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 13456858 - 13456909
Alignment:
Q  191 ccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||| || || ||||| ||||| ||||||||||||||||||    
T  13456858 ccaaagcattataaagatatgctgtagaaaaagggcatgttctattttgttc 13456909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 61662 - 61503
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatatttnnnnnnnnnnnctttattataaaggagaaatgagcaaattaaggaaaatagctacatc 100  Q
    ||||||||  ||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||| ||||| ||  |||    
T  61662 cacaaactcggatattctaaataaatcacttttactatatttttaaaaaa---ctttgttataaaggagaaatgagcaaattaagggaaataactgtatc 61566  T
Q  101 tttctaaaaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattacacaaatctca 163  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  61565 tttctaagaaattgttgtcgttcataaatgtgaaaatcaagcaagcatattgcacaaatctca 61503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 3399 - 3475
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  3399 tatatgtacatttctaaaacatttaccaaagcattataaagatttgttgtaggaaaagagcatgttttattttgttc 3475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 10590 - 10666
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||    
T  10590 tataagtacatttctaaaacatttaccaaagcattataaagatttgttataggaaaagaacatgttctattttgttc 10666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 12916 - 12987
Alignment:
Q  171 gtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||    
T  12916 gtacatttctaaaacatttaccaaaacattataaagatttgctgtaggaaaagaacatgttctattttgttc 12987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 100867 - 100798
Alignment:
Q  173 acatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    |||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  100867 acatttttaaaacatttaccaaaacattataaagatttgctgtaggaaaagagcatgttctattttgttc 100798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 25102 - 25178
Alignment:
Q  54 ctttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| ||  ||| ||||||||||||||||||||||    
T  25102 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcttaagaaattgttgtcgttcataaatg 25178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25010 - 25051
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    |||||||| |||||||||||||||| |||||||||| |||||    
T  25010 cacaaactcagatattctaaataaaccacttttactgtattt 25051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 26760 - 26684
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||   |||||||||||||||||| ||||||||||    
T  26760 tatatgtacatttctaaaatatttagcaaagcattataaagatttaccgtaggaaaagagcatgttttattttgttc 26684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 49215 - 49291
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattttgttc 242  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||| |||| ||||| |||||||| ||||||||||    
T  49215 tatatgtacatttctaaaacatttaccaaagtattataaaggtttgctgtatgaaaaaagcatgttttattttgttc 49291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 29978 - 30049
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctattt 237  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||| | ||||||||||||    
T  29978 tataagtacatttctaaaacatttaccaaagcattataaagatttcctgtaggaaaaaaacatgttctattt 30049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 26340 - 26412
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||| |||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  26340 tatatgtatatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 26412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 10203 - 10131
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgttctatttt 238  Q
    |||||||| |||||||||||||||||||||||||| |||| ||||  |||||||||| |||||||| ||||||    
T  10203 tatatgtatatttctaaaacatttaccaaagcattgtaaagatttactgtaggaaaatagcatgttttatttt 10131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 10970 - 11041
Alignment:
Q  59 ttataaaggagaaatgagcaaattaaggaaaatagctacatctttctaaaaaattgttgtcgttcataaatg 130  Q
    ||||||| || |||||| |||||||||| |||||||| ||| || |||| ||||||||||||||||||||||    
T  10970 ttataaaagataaatgaacaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatg 11041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10873 - 10914
Alignment:
Q  1 cacaaacttagatattctaaataaatcacttttactatattt 42  Q
    ||||||||  |||||||||||||||||||||||||| |||||    
T  10873 cacaaactcggatattctaaataaatcacttttactgtattt 10914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 693 - 628
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaatttgttgtaggaaaagagcatgtt 231  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||   ||||||||| | ||||||    
T  693 tatatgtacatttctaaaacatttatcaaagcattgtaaagatttaccgtaggaaaataacatgtt 628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 120146 - 120102
Alignment:
Q  166 tatatgtacatttctaaaacatttaccaaagcattataaaaattt 210  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||    
T  120146 tatatatatatttctaaaacatttaccaaagcattataaagattt 120102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University