View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20116_high_71 (Length: 249)
Name: NF20116_high_71
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_71 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 34288208 - 34288425
Alignment:
| Q |
14 |
aatatgttgtcattttcactttcccttatgaaattgcatgttaatattttggagagcttaatgaatataatcaattttattaccttggcattctttgaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288208 |
aatatgttgtcattttcactttcccttatgaaattgcatgttaatattttggagagcttaatgaatataatcaattttattaccttggcattctttgaac |
34288307 |
T |
|
| Q |
114 |
gagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatgacctaacaacatgaccttatcatggtgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288308 |
gagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatgacctaacaacatgaccttatcatggtgt |
34288407 |
T |
|
| Q |
214 |
gtcatgtaattgttagag |
231 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34288408 |
gtcatgtaattgttagag |
34288425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 39076132 - 39076061
Alignment:
| Q |
93 |
ttaccttggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatc |
164 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||| ||||| || |||||||| |||||||| |
|
|
| T |
39076132 |
ttaccttggcattctttgaactagtccttctccaaaatggttaaaggcaatggtaacttgcatattcttatc |
39076061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 43131567 - 43131428
Alignment:
| Q |
92 |
attaccttggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatgacctaa |
191 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||||||||||| || |||||||||| || |||||||| || |
|
|
| T |
43131567 |
attaccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttcttgtcttgagtataagtatcactatgacccaa |
43131468 |
T |
|
| Q |
192 |
caacatgaccttatcatggtgtgtcatgtaattgttagag |
231 |
Q |
| |
|
| ||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
43131467 |
aagcataactttatcatggtgagtcatataattgttagag |
43131428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 7593252 - 7593343
Alignment:
| Q |
94 |
taccttggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatg |
185 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| || ||||||||||| || |||||||||| ||| || || |||||||| || ||||| |
|
|
| T |
7593252 |
taccttggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcatgtccttgtcttgtgtataagaatcactatg |
7593343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 50436794 - 50436850
Alignment:
| Q |
99 |
tggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcat |
155 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
50436794 |
tggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttacttgcat |
50436850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University