View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_79 (Length: 231)
Name: NF20116_high_79
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_79 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 41486043 - 41485844
Alignment:
| Q |
20 |
atgctcttctaaatcctccaaaaatctggtggaggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagact |
119 |
Q |
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| T |
41486043 |
atgctcttctaaatcctccaaaaatctggtggtggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccacagact |
41485944 |
T |
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| Q |
120 |
gatctccataaaatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctct |
219 |
Q |
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| T |
41485943 |
gatctccataaaatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctct |
41485844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 41482809 - 41482743
Alignment:
| Q |
153 |
tcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctct |
219 |
Q |
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| T |
41482809 |
tcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagctattctatttcgtctct |
41482743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 41482906 - 41482811
Alignment:
| Q |
23 |
ctcttctaaatcctccaaaaatctggtggaggtgaaactggagagactggagaagtgatggatgcactattaactgatc--catatccaaccatag |
116 |
Q |
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| T |
41482906 |
ctcttctaaagcttccgagaatcaggtggggatgaaacgagagagactggagaagagaaggatgcaccatcaactgatctatatatccaaccatag |
41482811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 45384916 - 45385080
Alignment:
| Q |
55 |
tgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataaaatgccaatttcgtccataatttc |
154 |
Q |
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| T |
45384916 |
tgaaacaggagagactggaagagagatggatgcaccatcaaccggtctatatccaaccatagactgatctccataaaatgacaattccattcgtcttttc |
45385015 |
T |
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| Q |
155 |
ttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctct |
219 |
Q |
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| T |
45385016 |
ttctcggtaaggtacatttcagccatatcaccatcatcatccataagctgctctatttcgtctct |
45385080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 5796133 - 5796212
Alignment:
| Q |
55 |
tgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataaaatg |
134 |
Q |
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| T |
5796133 |
tgaaacgggagagactggataaaagatggatgtgtcatcaactggtctatatccaaccagagactgatctccataaaatg |
5796212 |
T |
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