View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_8 (Length: 512)
Name: NF20116_high_8
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 190 - 436
Target Start/End: Original strand, 42187407 - 42187653
Alignment:
| Q |
190 |
tataagatattatctagaccttatagaaataagcttaaaataatctcacaactacttatgttggtaaatatatccaaaaacgcaaattcaaacaaaccca |
289 |
Q |
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| T |
42187407 |
tataagatataatctagaccttatagaaataagcttaaaataatctcacaactacttatgttggtaaatatatccaaaaacgcaaattcaaacaaaccca |
42187506 |
T |
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| Q |
290 |
aaatatgtttcatctatttcactctcatacaattttaatannnnnnnctacctttttccacagaacttggaggaggatgttacaattgacactgtcccta |
389 |
Q |
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| T |
42187507 |
aaatatgtttcatctatttcactctcatacaattttaatatttttttctacctttttccacagaacttggaggaggatgttacaattgacactgtcccta |
42187606 |
T |
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| Q |
390 |
attttaaaaagaagcatgaagttaatgttggtatgtaggttgccttg |
436 |
Q |
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| T |
42187607 |
attttaaaaagaagcatgaagttaatgttggtatgtaggttaccttg |
42187653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 42187198 - 42187371
Alignment:
| Q |
7 |
ataacaaccatcaaagcaataacaactggctggttacatccaaccattaaccaagatgtattgtcttgaccgctaaattaacaacttaatcaagcattta |
106 |
Q |
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| T |
42187198 |
ataacaaccatcaaagcaataacaactggctggttacatccaaccattaaccaagatgtattgtcttgaccgctaaattaacaacttaaccaagcattta |
42187297 |
T |
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| Q |
107 |
agtataagatatatttttgttcaaaacaaaaagtataagatatatttaaaacgaaagataagattaaattaaac |
180 |
Q |
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| T |
42187298 |
agtataagatatatttttgttcaaaacaaaaagtataagatatatttaaaacgaaagctaagattaaattaaac |
42187371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 42204249 - 42204308
Alignment:
| Q |
7 |
ataacaaccatcaaagcaataacaactggctggttacatccaaccattaaccaagatgta |
66 |
Q |
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| T |
42204249 |
ataacaaccatcaaagcaataacaactggctggttgcatccaaccattaaccaagatgta |
42204308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 42197001 - 42197107
Alignment:
| Q |
11 |
caaccatcaaagcaataacaactggctggttacatccaaccattaaccaagatgtattgtcttgaccgctaaatta---acaacttaatcaagcatttaa |
107 |
Q |
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| T |
42197001 |
caactatcaaagcaataacatctggatggttgcatccaaccattaaccaagatgtactgtcttgaccatgaaactaactacaacttaatcaagcatttat |
42197100 |
T |
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| Q |
108 |
gtataag |
114 |
Q |
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| T |
42197101 |
gtataag |
42197107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 42197283 - 42197343
Alignment:
| Q |
342 |
tttttccacagaacttggaggaggatgttacaattgacactgtccctaattttaaaaagaa |
402 |
Q |
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| T |
42197283 |
tttttccacagaacttggaggaggatgttacaattgacacagtccctaatgttaaaaagaa |
42197343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 426
Target Start/End: Original strand, 42204407 - 42204490
Alignment:
| Q |
343 |
ttttccacagaacttggaggaggatgttacaattgacactgtccctaattttaaaaagaagcatgaagttaatgttggtatgta |
426 |
Q |
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| T |
42204407 |
ttttccatagaacttggaggatgatgttacaattgataccgtccccaatgttaagaagaaacatgaagttaatgttggtgtgta |
42204490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 42197536 - 42197578
Alignment:
| Q |
394 |
taaaaagaagcatgaagttaatgttggtatgtaggttgccttg |
436 |
Q |
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| T |
42197536 |
taaaaagaagcatgaagttaatgttggtatgtaggttaccttg |
42197578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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