View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_high_83 (Length: 217)
Name: NF20116_high_83
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_high_83 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 26822896 - 26822810
Alignment:
| Q |
113 |
ttgaaataaagtgttcttttagtggtagtaattattaattgtccactcaaaaataattattaatagtgaatgattgataggttaagg |
199 |
Q |
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| T |
26822896 |
ttgaaataaagtgttcttttagtggtagtaattattaattgtccactcaaaaataattattaatagtgaatgattgataggttaagg |
26822810 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26822976 - 26822908
Alignment:
| Q |
1 |
aaagacaaatattttaagagnnnnnnntaaataaagaatacacttaatttgagaaagaaggagtataca |
69 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26822976 |
aaagacaaatattttgagagaaaaaaataaataaagaatacacttaatttgagaaagaaggagtataca |
26822908 |
T |
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