View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_10 (Length: 495)
Name: NF20116_low_10
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 40566025 - 40565568
Alignment:
| Q |
11 |
aagaaaataagagcccactagctaccttacttagaaagaaggaaattaatttatcaaggacacgtggctgctgtagctatttgcgactacgcacgcaaat |
110 |
Q |
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| T |
40566025 |
aagaaaataagagcc-actacgtaccttacttagaaagaaggaaattaatttatcaaggacacgtggctgctgtagctacttgccactacgcacgcaaat |
40565927 |
T |
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| Q |
111 |
gcaatcttgataaccttttccaagagctgacagtaccttattgtggaatcattgtaaggggaggtccataacaaccaaaagtcgaaaagaaagaagagat |
210 |
Q |
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| T |
40565926 |
gcaatcttgataaccttttccaagagctgacagtaccttattgtggaatcatggtaaggggaggtccataacaaccaaaagtcgaaaagaaaga---gat |
40565830 |
T |
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| Q |
211 |
agagttaaataatgtacttacaaaaaggaaccaaaataacttcctccatattcgatatctttcaaagatgaaataatcgagctctatattactgctaata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40565829 |
agagttaaataatgtacttacaaaaaggaaccaaaataacttcctccatattcgatatctttcaaagatgaaataattgagctctatattactgctaata |
40565730 |
T |
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| Q |
311 |
acagtaaatgtccacttgggtccaaaattgagaattactaatggtcaagggaa-aaaataagatcaacgagaatatcatcatgattactcaagagttagg |
409 |
Q |
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| T |
40565729 |
acagtaaatgtccacttgggtccaaaattgagaattactaatggtcaagggaaaaaaataagatcaacgagaatatcatcatgattactcaa-------g |
40565637 |
T |
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| Q |
410 |
agttaggagttaggaccatttggtcagtagtacatgtacatgaatatatcatatctatatgtttaatgt |
478 |
Q |
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| T |
40565636 |
agttaggagttaggaccatttggtcagtagtacatgtacatgaatatatcatatctatatgtttaatgt |
40565568 |
T |
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