View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_12 (Length: 445)
Name: NF20116_low_12
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 1516022 - 1516445
Alignment:
| Q |
1 |
ctggaacatgatgcaaaggttaaaactctttctagttgaagatataatttttacttctttcctattttcttatatctccaattctnnnnnnntgtaggaa |
100 |
Q |
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| T |
1516022 |
ctggaacatgatgcaaaggtttaaactctttctagttgaagatataatttttacttctttcctattttcttatatctccaattctaaaaaaatgtaggaa |
1516121 |
T |
|
| Q |
101 |
catccagagaaatatgatattgaagggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatctttctttgcatatcaataatcc |
200 |
Q |
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| T |
1516122 |
catccagagaaatatgatattgaagggctaactggaaatgaatctgaagttattgaaatggtcagtcaacgttttatctttctttgcatatcaataatcc |
1516221 |
T |
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| Q |
201 |
ttctacttgtgtgtttatgtcatattacttgcttgcaaatagtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtg |
300 |
Q |
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| T |
1516222 |
ttctacttgtgtgtttatgtcatattacttgcttgcaaatagtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtg |
1516321 |
T |
|
| Q |
301 |
ttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaac |
400 |
Q |
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| T |
1516322 |
ttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaac |
1516421 |
T |
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| Q |
401 |
agattcagaagaagaaagtagcac |
424 |
Q |
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| T |
1516422 |
agattcagaagaagaaagtagcac |
1516445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 36613686 - 36613548
Alignment:
| Q |
278 |
ctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattg |
377 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||| |||||||| || ||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
36613686 |
ctggcaggatttgatgcttggtgttgctgatcttcatacaccagaggctgtggcagctgcagagtcagctgtttccagttgtcagcctgtgatttcattg |
36613587 |
T |
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| Q |
378 |
gctgctgacgatgatagtgaaacagattcagaagaagaaagt |
419 |
Q |
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| T |
36613586 |
gctgct---gatgatagtgaaatagattcagaagaagaaagt |
36613548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 36613853 - 36613768
Alignment:
| Q |
93 |
tgtaggaacatccagagaaatatgatattgaagggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatc |
178 |
Q |
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||||||| |||||||||||||||||| |||||| ||| || ||||||||||| ||||||||||||||||| |||||||||| |||| |
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| T |
36613853 |
tgtaggaccatccagagaaatatgattttgaagagctaacgggaaatgaatccgaagttattgaaatggttagtcaatgttctatc |
36613768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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