View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_13 (Length: 444)
Name: NF20116_low_13
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 173 - 430
Target Start/End: Original strand, 36672039 - 36672296
Alignment:
| Q |
173 |
cttctctcgctcttttctcttcacgtttctctgattcttattctcagctggatccgaaacacactcttgcgtcgagcaaggattcgaatcagtctcttga |
272 |
Q |
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| T |
36672039 |
cttctctcgctcttttctcttcacgtttctctgattcttattctcagctggatccgaaacacactcttgcgtcgagcaaggattcgaatcagtctcttga |
36672138 |
T |
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| Q |
273 |
ggctcgttcttcacactttccaccggaaacagccgcgaatctcccggtgaagaattctctcccgcgaacactgagaatttcgcggcgcgttcaatcaacg |
372 |
Q |
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| T |
36672139 |
ggctcgttcttcacactttccaccggaaacagccgcgaatctcccggtgaagaattctctccggcgaacactgagaatttcgcggcgcgttcaatcaacg |
36672238 |
T |
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| Q |
373 |
cggcgttagtaggaaaggttaaattcccgttagaagagttcggaagatagggtttctg |
430 |
Q |
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| T |
36672239 |
cggcgttagtaggaaaagttaaattcccgttagaagagttcggaagatagggtttctg |
36672296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 21508731 - 21508658
Alignment:
| Q |
324 |
gaattctctcccgcgaacactgagaatttcgcggcgcgttcaatcaacgcggcgttagtaggaaaggttaaatt |
397 |
Q |
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| T |
21508731 |
gaattttctccggcgaaaacggagaatctagcggcgcgttcaaccaacgcggcgttggaagggaaagttaaatt |
21508658 |
T |
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