View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_14 (Length: 444)
Name: NF20116_low_14
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 50934686 - 50935111
Alignment:
| Q |
1 |
aacttgattaaccctatcatatatgcaaaaatgcaaacagaaaagtagaaacaattcaaactgggagcttttcaattggagcaagacaaaaagcacaaac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50934686 |
aacttgattaatcctatcatatatgcaaaaatgcaaacagaaaagtagaaacaattcaaactgggagcttttcaattggagcaagacaaaaagcacaaac |
50934785 |
T |
|
| Q |
101 |
tggttttggaaatattaacccttcaataactgtttcctgcctcggaacacaagcacactgttattgaacacaaactgtgcctattgctaaaagactaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50934786 |
tggttttggaaatattaacccttcaataactgtttcctgcctcggaacacaagcacactgttattgaacacaaactgtgcctattgctaaaagactaaaa |
50934885 |
T |
|
| Q |
201 |
gaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50934886 |
gaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaa |
50934985 |
T |
|
| Q |
301 |
ttccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatca |
400 |
Q |
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| T |
50934986 |
ttccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaagttgaataaataagattaatgtgatca |
50935085 |
T |
|
| Q |
401 |
aaataccttcttcaatgagtgaccat |
426 |
Q |
| |
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| T |
50935086 |
aaataccttcttcaatgagtgaccat |
50935111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 206 - 426
Target Start/End: Complemental strand, 26553007 - 26552783
Alignment:
| Q |
206 |
attttccaaaagttgaagtgaagatgaat----acctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaat |
301 |
Q |
| |
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||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| || | | ||||||||||||||||| |||||||| |
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| T |
26553007 |
attttcctaaagttaaagtgaagatgaatgaatacctttgcaaaatactttgctggattagtagcgcattcagttattgtcaaaagtgcgagaccgaaat |
26552908 |
T |
|
| Q |
302 |
tccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatcaa |
401 |
Q |
| |
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|||| || ||||||||| |||||||||||||||| || | ||||||| | |||| |||||||||||||||| |||||| ||| |||||| |||||||| |
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| T |
26552907 |
tcccggatgcttcattctttactgcctgatatgaatttaacttgaaattgaatatctcaatagataaatgaagttgaattgataggattaaagtgatcaa |
26552808 |
T |
|
| Q |
402 |
aataccttcttcaatgagtgaccat |
426 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
26552807 |
gttacctttttcaatgagtgaccat |
26552783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 195 - 426
Target Start/End: Complemental strand, 26559102 - 26558869
Alignment:
| Q |
195 |
ctaaaagaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgtta |
294 |
Q |
| |
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|||||||||||||||||| |||||||||| | || | |||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||| | |
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| T |
26559102 |
ctaaaagaagcattttcctaaagttgaagggctgagggatacctttgcgaaatactttgctggattagtagcacattgaattattgtcaccagtgctcga |
26559003 |
T |
|
| Q |
295 |
ccgaaattccctgaagcttcattccttactgcctgatatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaa--taaataagattaa |
392 |
Q |
| |
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||||||||||| || | ||||||| |||||||||||||| | |||||| ||||| | |||| ||||||||| ||||| ||||| | ||||||| || |
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| T |
26559002 |
ccgaaattcccggatgtttcattctttactgcctgatataaattcagcatgaaattatataccacaatagatagatgaagttgaagtttgataagatcaa |
26558903 |
T |
|
| Q |
393 |
tgtgatcaaaataccttcttcaatgagtgaccat |
426 |
Q |
| |
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| T |
26558902 |
tttgatccagttaccttcttcagtgagtgaccat |
26558869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 231 - 424
Target Start/End: Complemental strand, 26564826 - 26564633
Alignment:
| Q |
231 |
gaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaattccctgaagcttcattccttactgcctga |
330 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||| || ||||||||| |||||||| ||| |||||||| || | ||||||| ||||||||||| |
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| T |
26564826 |
gaatacctttgcaaaatactttgctggattatgagcacattgtattattgtccgaagtgcgtgaccaaaattccccgatgtttcattctttactgcctga |
26564727 |
T |
|
| Q |
331 |
tatgatttcagcttgaaaatcaatacttcaatagataaatgaaattgaataaataagattaatgtgatcaaaataccttcttcaatgagtgacc |
424 |
Q |
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| T |
26564726 |
tatgaagttagcttgaaattgaataccaaaatagataaatgcaattgaaataaaaagatgaaagtaatcacattaccttcttcaatgagtgacc |
26564633 |
T |
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