View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_15 (Length: 432)
Name: NF20116_low_15
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 114 - 414
Target Start/End: Original strand, 19890019 - 19890325
Alignment:
| Q |
114 |
tgtttatattccacatcaaagttgactacttgatcaaagttgcctacttggtcatat------tgattgcgttagaaaaggttgtgtgcagaaaagacag |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19890019 |
tgtttattttccacatcaaagttgactacttgatcaaagttgcctacttggtcatataaatattgattgcgttagaaaaggttgtgtgcagaaaagacag |
19890118 |
T |
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| Q |
208 |
cacaatcacccttgtttcttttgttgtgtaattctctttcaataagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890119 |
cacaatcacccttgtttcttttgttgtgtaattctctttcaataagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaat |
19890218 |
T |
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| Q |
308 |
cagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatgggg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890219 |
cagttagaggaatctactaattccacttatgatagaaaaacagaagtgaaaaattttgatgattcaaaagctggtgtcagaggtttggtggagcatgggg |
19890318 |
T |
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| Q |
408 |
tgtcaaa |
414 |
Q |
| |
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||||||| |
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| T |
19890319 |
tgtcaaa |
19890325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 19889936 - 19890032
Alignment:
| Q |
1 |
taatttctaataaagacacactttgaataaaactttcacatgtttattatgtctttaatgaattggggtcctccgttattttatgtttatattccac |
97 |
Q |
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| T |
19889936 |
taatttctaataaagacacactttgaataaaactttcacatgtttattatgtctttaatgaattggggtcctccgttattttatgtttattttccac |
19890032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 266 - 400
Target Start/End: Original strand, 19844322 - 19844454
Alignment:
| Q |
266 |
tggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttg |
365 |
Q |
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||||||||||| ||||||||||||||||||||||| |||| || |||| |||| ||||||||||||||||||||| | | |||||||||||||||| |
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| T |
19844322 |
tggtgttgttt--ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttg |
19844419 |
T |
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| Q |
366 |
atgattcaaaagctggtgtcagaggtttggtggag |
400 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
19844420 |
atgattcaaaagctggtgtgagaggtttggtggag |
19844454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 414
Target Start/End: Original strand, 29462560 - 29462713
Alignment:
| Q |
261 |
tattttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagc |
360 |
Q |
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|||| ||||||||||| ||| |||||||||||||| ||||| |||| || ||| ||||||| | | ||| ||||||||||||| || | ||||| ||||| |
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| T |
29462560 |
tattctggtgttgtttgcctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaagttaaagc |
29462659 |
T |
|
| Q |
361 |
ttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaa |
414 |
Q |
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||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
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| T |
29462660 |
ttttgatgattcaaaagttggtgtcaaaggtttggtggattctggggtgtcaaa |
29462713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 278 - 411
Target Start/End: Original strand, 1092841 - 1092974
Alignment:
| Q |
278 |
cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaag |
377 |
Q |
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|||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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| T |
1092841 |
cctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaag |
1092940 |
T |
|
| Q |
378 |
ctggtgtcagaggtttggtggagcatggggtgtc |
411 |
Q |
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||||||| ||||||||||||| ||||||||| |
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| T |
1092941 |
taggtgtcaaaggtttggtggagtctggggtgtc |
1092974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 414
Target Start/End: Complemental strand, 25225169 - 25225082
Alignment:
| Q |
327 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaa |
414 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||| |||||| | |||||| ||||||| |||| |
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| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaa |
25225082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 251 - 414
Target Start/End: Complemental strand, 49465631 - 49465468
Alignment:
| Q |
251 |
aagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacgg |
350 |
Q |
| |
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|||| ||||||||| |||| |||||| | |||||| ||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | | |
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| T |
49465631 |
aagacagtgctattctggttttgtttccttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctg |
49465532 |
T |
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| Q |
351 |
aagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaa |
414 |
Q |
| |
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||||||||||||||||||||||| ||| || |||| |||||||| ||| |||||| ||||| |
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| T |
49465531 |
aagtgaaagcttttgatgattcacgagcaggcgtcaatggtttggttgagtctggggtttcaaa |
49465468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 49465915 - 49465849
Alignment:
| Q |
30 |
aaactttcacatgtttattatgtctttaatgaattggggtcctccgttattttatgtttatattccac |
97 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
49465915 |
aaactatcacgtgtttattatgtctttaatgaattggggtcct-ctttattttatgtttatattccac |
49465849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 408
Target Start/End: Original strand, 8348970 - 8349051
Alignment:
| Q |
327 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggt |
408 |
Q |
| |
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||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||| | |||||| |||||| |
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| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggt |
8349051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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