View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_17 (Length: 430)
Name: NF20116_low_17
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 32702052 - 32702446
Alignment:
| Q |
19 |
atcgatgtcatcaaaacttaatatcatccaagtattttctgtgtttgaactgtctgtggcaaatggtggagaaaactttactggatttcccaatcttcca |
118 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32702052 |
atcgatgtcatcgaaacttaataccatccaagtattttctgtgtttgaactgtctgtggcaaatggtggagaaaactttactggatttcccaatcttcca |
32702151 |
T |
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| Q |
119 |
ctattgttattgtttgcttcaattcaattcggattcgtattcctgcttgctgcttatatataaaagcaaacaaacaacttggcttctttctttcattttt |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||| | || |||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
32702152 |
ctattgttattgtttgcttcaattcaattca-attcggattcgta-ttcctgcttatatataaaaacaaacaaataacttggcttctttctttcattttt |
32702249 |
T |
|
| Q |
219 |
ccagcaaccatagaaaattgtttcaaaaatttatttatattaaaagacaataataacaataaactatatccaacgtatacaggtttttctggtgctatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32702250 |
ccagcaaccatagaaaattgtttcaaaaatttatttatattaaaagacaataataacaataaactatatccaacgtatacaggtttttctggtgctatgt |
32702349 |
T |
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| Q |
319 |
tttgtcagataagaaagaaagcccacgtgtttgtgattgtcaggttcaagacaaagcacgtttttccctccttcttgtctctaatctagtggaatga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32702350 |
tttgtcagataagaaagaaagcccacgtgtttgtgattgtcaggttcaagacaaagcacgtttttccctccttcatgtctctaatctagtggaatga |
32702446 |
T |
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