View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_19 (Length: 427)
Name: NF20116_low_19
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 33701466 - 33701863
Alignment:
| Q |
13 |
aatatgtgacaaacgacaacctgactctataatttaatttgatattcccaataaatctaacaaatatctctcaaaataatttaaattaccacatcaactc |
112 |
Q |
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| T |
33701466 |
aatatgtgacaaatgacaacctgactctataatttaatttgatattcccaataagtctaacaaatatctctcaaaataatttaaattaccacatcaactc |
33701565 |
T |
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| Q |
113 |
gtaatatacaatttgagtttcacataggtggttagttcaattggtgagctaaattaggacgtttaagaaattttaataggagatcctaaattctatttta |
212 |
Q |
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| T |
33701566 |
ataatatacaatttgagtttgacataggtggttagttcaattggtgagctaaa---ggacgtttaagaaattttaataggagatcctaaattctatttta |
33701662 |
T |
|
| Q |
213 |
aaatgttttattgacacaatttttaacatccgacatcatataaagatattgtttagattttctgataattattttctttcacatgtaggttgggtaacac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33701663 |
aaatgttttattgacacaatttttaacatccgacatcatataaagatattgtttagattttctgataattattttctttcacatgtaggttgggtaacac |
33701762 |
T |
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| Q |
313 |
aagtactttatacgatgttgaatatataatgttgaaaattggtgttcaaatatcattgttgaaactgaagcaatatgtggctccatttgcatggttcatt |
412 |
Q |
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||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33701763 |
aagtattttatacggtgttgaatatataatgttgaaaatcggtgttcaaatatcattgttgaaactgaagcaatatgtggctccatttgcatggttcatt |
33701862 |
T |
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