View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_low_2 (Length: 667)

Name: NF20116_low_2
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_low_2
NF20116_low_2
[»] chr8 (10 HSPs)
chr8 (209-479)||(13462933-13463203)
chr8 (505-572)||(44557934-44558002)
chr8 (505-570)||(28155357-28155423)
chr8 (78-115)||(13462804-13462841)
chr8 (360-471)||(22594329-22594440)
chr8 (360-400)||(44553210-44553250)
chr8 (432-482)||(16905255-16905305)
chr8 (432-473)||(10134617-10134658)
chr8 (432-488)||(2221974-2222030)
chr8 (432-488)||(30864157-30864213)
[»] chr3 (18 HSPs)
chr3 (209-485)||(32304229-32304505)
chr3 (209-472)||(42540173-42540435)
chr3 (212-479)||(34819430-34819675)
chr3 (212-471)||(17509475-17509714)
chr3 (78-115)||(42540527-42540564)
chr3 (360-404)||(34817409-34817453)
chr3 (78-113)||(32304599-32304634)
chr3 (505-554)||(29076801-29076850)
chr3 (78-114)||(17509800-17509836)
chr3 (360-404)||(17514645-17514689)
chr3 (360-404)||(32305206-32305250)
chr3 (78-114)||(34817961-34817997)
chr3 (432-491)||(13301964-13302023)
chr3 (432-491)||(13312620-13312679)
chr3 (432-473)||(43464821-43464862)
chr3 (432-473)||(52857293-52857334)
chr3 (352-400)||(33772072-33772120)
chr3 (432-472)||(53228222-53228262)
[»] chr6 (17 HSPs)
chr6 (209-484)||(12260444-12260719)
chr6 (209-472)||(20745595-20745859)
chr6 (209-412)||(27129664-27129867)
chr6 (78-115)||(12260812-12260849)
chr6 (78-115)||(16146772-16146809)
chr6 (78-115)||(20745950-20745987)
chr6 (440-483)||(27129896-27129939)
chr6 (78-115)||(27129537-27129574)
chr6 (360-404)||(10998802-10998846)
chr6 (360-404)||(12261426-12261470)
chr6 (254-289)||(17163849-17163884)
chr6 (256-330)||(17163873-17163945)
chr6 (432-473)||(12586860-12586901)
chr6 (435-484)||(29435059-29435108)
chr6 (360-404)||(901495-901539)
chr6 (360-404)||(902690-902734)
chr6 (360-404)||(16146155-16146199)
[»] chr4 (25 HSPs)
chr4 (213-484)||(40681290-40681561)
chr4 (209-483)||(9086286-9086566)
chr4 (505-627)||(50465856-50465979)
chr4 (508-565)||(523289-523347)
chr4 (360-471)||(53596085-53596196)
chr4 (505-573)||(5787978-5788047)
chr4 (78-115)||(40681151-40681188)
chr4 (360-404)||(2734875-2734919)
chr4 (360-400)||(11816690-11816730)
chr4 (360-404)||(26281186-26281230)
chr4 (360-404)||(50282868-50282912)
chr4 (432-479)||(701636-701683)
chr4 (432-479)||(769935-769982)
chr4 (275-330)||(12096547-12096601)
chr4 (370-451)||(45044399-45044480)
chr4 (370-404)||(44182640-44182674)
chr4 (78-115)||(9086659-9086696)
chr4 (432-473)||(14251205-14251246)
chr4 (434-487)||(14947180-14947233)
chr4 (432-484)||(757507-757559)
chr4 (432-472)||(2735419-2735459)
chr4 (360-404)||(9087296-9087340)
chr4 (360-404)||(11815939-11815983)
chr4 (360-404)||(40680543-40680587)
chr4 (360-404)||(44183742-44183786)
[»] chr2 (21 HSPs)
chr2 (209-482)||(40468046-40468320)
chr2 (211-491)||(28190272-28190555)
chr2 (209-479)||(19297530-19297801)
chr2 (209-479)||(8028969-8029239)
chr2 (209-484)||(20686479-20686737)
chr2 (360-471)||(10709300-10709411)
chr2 (360-404)||(29519236-29519280)
chr2 (78-115)||(8029332-8029369)
chr2 (78-115)||(20686324-20686361)
chr2 (78-115)||(19297895-19297932)
chr2 (360-404)||(8029945-8029989)
chr2 (360-404)||(28189525-28189569)
chr2 (432-473)||(11131192-11131233)
chr2 (78-115)||(40468413-40468449)
chr2 (425-473)||(677393-677441)
chr2 (360-400)||(8885740-8885780)
chr2 (360-400)||(8892997-8893037)
chr2 (360-400)||(16330774-16330814)
chr2 (360-404)||(19298505-19298549)
chr2 (360-404)||(20685707-20685751)
chr2 (360-404)||(40469033-40469077)
[»] chr5 (21 HSPs)
chr5 (209-483)||(23083364-23083639)
chr5 (209-479)||(6793770-6794018)
chr5 (78-115)||(6794109-6794146)
chr5 (360-469)||(24042615-24042724)
chr5 (360-473)||(30645663-30645776)
chr5 (360-473)||(14347410-14347521)
chr5 (78-115)||(23083234-23083271)
chr5 (360-471)||(28905393-28905504)
chr5 (360-471)||(28941788-28941899)
chr5 (360-400)||(13823782-13823822)
chr5 (360-404)||(23082616-23082660)
chr5 (360-400)||(24041820-24041860)
chr5 (360-404)||(38384946-38384990)
chr5 (361-488)||(19798657-19798784)
chr5 (360-404)||(6794715-6794759)
chr5 (360-400)||(13824582-13824622)
chr5 (360-404)||(37191671-37191715)
chr5 (432-472)||(39547978-39548018)
chr5 (360-404)||(39548536-39548580)
chr5 (360-404)||(42766895-42766939)
chr5 (360-404)||(42767629-42767673)
[»] chr1 (31 HSPs)
chr1 (209-485)||(36142920-36143196)
chr1 (209-479)||(35122983-35123252)
chr1 (253-479)||(47112942-47113169)
chr1 (212-404)||(49653498-49653705)
chr1 (505-576)||(9239528-9239600)
chr1 (505-565)||(48651615-48651676)
chr1 (372-479)||(49964093-49964203)
chr1 (78-115)||(35122872-35122909)
chr1 (78-115)||(36142810-36142847)
chr1 (360-404)||(29022485-29022529)
chr1 (78-114)||(49653361-49653397)
chr1 (360-471)||(16659840-16659951)
chr1 (78-115)||(47112787-47112824)
chr1 (360-404)||(24326660-24326704)
chr1 (360-404)||(24332250-24332294)
chr1 (360-404)||(36142188-36142232)
chr1 (360-400)||(47112176-47112216)
chr1 (432-491)||(5805986-5806045)
chr1 (432-487)||(6328338-6328393)
chr1 (360-403)||(50124537-50124580)
chr1 (432-479)||(51597964-51598011)
chr1 (362-400)||(7964196-7964234)
chr1 (362-400)||(7965447-7965485)
chr1 (431-473)||(10719640-10719682)
chr1 (370-404)||(24508288-24508322)
chr1 (432-473)||(5804702-5804743)
chr1 (360-404)||(5805913-5805957)
chr1 (360-404)||(29021660-29021704)
chr1 (360-404)||(31698221-31698265)
chr1 (360-404)||(38658812-38658856)
chr1 (360-404)||(52751499-52751543)
[»] chr7 (21 HSPs)
chr7 (209-485)||(17279227-17279504)
chr7 (209-479)||(30766468-30766739)
chr7 (360-479)||(25445015-25445133)
chr7 (78-115)||(17279097-17279134)
chr7 (78-115)||(30766340-30766377)
chr7 (78-113)||(22056350-22056385)
chr7 (505-579)||(37207485-37207560)
chr7 (360-404)||(17278477-17278521)
chr7 (360-404)||(30765746-30765790)
chr7 (360-404)||(42753991-42754035)
chr7 (370-404)||(16956008-16956042)
chr7 (423-473)||(16962853-16962903)
chr7 (370-404)||(17236142-17236176)
chr7 (269-326)||(36986301-36986356)
chr7 (432-473)||(42754545-42754586)
chr7 (360-400)||(14681979-14682019)
chr7 (360-400)||(17238574-17238614)
chr7 (360-400)||(18297236-18297276)
chr7 (360-404)||(25443075-25443119)
chr7 (425-473)||(34621786-34621834)
chr7 (354-410)||(45087137-45087193)
[»] scaffold0202 (3 HSPs)
scaffold0202 (212-403)||(21307-21498)
scaffold0202 (430-479)||(21235-21283)
scaffold0202 (82-114)||(21598-21630)
[»] scaffold0042 (2 HSPs)
scaffold0042 (256-344)||(91309-91396)
scaffold0042 (423-483)||(90159-90219)
[»] scaffold0002 (2 HSPs)
scaffold0002 (432-472)||(428980-429020)
scaffold0002 (435-487)||(429159-429211)
[»] scaffold0220 (1 HSPs)
scaffold0220 (432-473)||(25972-26013)
[»] scaffold0192 (1 HSPs)
scaffold0192 (360-400)||(14641-14681)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 7e-97; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 209 - 479
Target Start/End: Original strand, 13462933 - 13463203
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  13462933 catgaaagtgttgttggtggtgttcttattttccagaaaatgggggaggaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 13463032  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  13463033 gccaatgccaaaatgacacgtggatagcagttaacgttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaa 13463132  T
Q  409 acaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    ||||          |||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  13463133 acaatctattttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaa 13463203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 44558002 - 44557934
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaagataccc 572  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| ||||| | ||||||||| ||||||    
T  44558002 ttctttccttatattttcattcctttcactttctttcgttaaaccttcttctccaaaccaaatataccc 44557934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 570
Target Start/End: Original strand, 28155357 - 28155423
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaagatac 570  Q
    ||||||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||||||| ||||    
T  28155357 ttctttccttatactttcattccttttactttctttccctaaactttcttatgcaaaccaaacatac 28155423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 13462804 - 13462841
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  13462804 ggtgttgaagatgatttaattttgtttggagatttgtc 13462841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 471
Target Start/End: Complemental strand, 22594440 - 22594329
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||  ||||||          | |||||  ||||||||||||||||||||  ||||||    
T  22594440 taacagaagggaccaaaacaggtaacagagataaagataaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaa 22594341  T
Q  460 gggacgaaaaga 471  Q
    ||||| ||||||    
T  22594340 gggaccaaaaga 22594329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 44553250 - 44553210
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  44553250 taacggaagggaccaaaacaggtaacggagataaagataaa 44553210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 16905305 - 16905255
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaacc 482  Q
    ||||||||||||||||||||  ||||||||||| ||||||||  |||||||    
T  16905305 accaaagcgataccaaataaatacttaagggaccaaaagagcatttaaacc 16905255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 10134658 - 10134617
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  10134658 accaaagcgataccaaataaatacttaagggacaaaaagagc 10134617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 488
Target Start/End: Original strand, 2221974 - 2222030
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaacctatatt 488  Q
    |||||||||||||||| |||  | ||||||||| ||||||||  |||||||||||||    
T  2221974 accaaagcgataccaattaaatagttaagggaccaaaagagcatttaaacctatatt 2222030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 488
Target Start/End: Complemental strand, 30864213 - 30864157
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaacctatatt 488  Q
    |||||||||||||||| |||  ||||||||||| ||||||||  |||||||| ||||    
T  30864213 accaaagcgataccaattaaatacttaagggaccaaaagagcatttaaacctttatt 30864157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 3e-93; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 209 - 485
Target Start/End: Complemental strand, 32304505 - 32304229
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  32304505 catgaaagtgttgttggtggtgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 32304406  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    |||||||||||||||||||||||||| ||||||||        ||||||| ||||||||  ||||||||||||||||||||||||||||||||||| |||    
T  32304405 gccaatgccaaaatgacacgtggataacagttaacgtttttttattaaaattaacggaaaggaccaaaacatgtaacggagataaagataaagtaccaaa 32304306  T
Q  409 acaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacctat 485  Q
    ||||          |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  32304305 acaatcttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcctat 32304229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 209 - 472
Target Start/End: Complemental strand, 42540435 - 42540173
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||     
T  42540435 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaag--gaagaaaataaattaagtttttca 42540338  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaac-annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaa 407  Q
    ||||||| |||||||||||||| ||||||||||||         ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||    
T  42540337 gccaatgtcaaaatgacacgtgaatagcagttaacgttttttttattaaaattaacggaagagaccaaaacatttaatggagataaagataaagtaccaa 42540238  T
Q  408 aacaa-nnnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagag 472  Q
    |||||           |||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  42540237 aacaatctttttttttactt-agggaccaaagcgataccaaataataacttaagggacgaaaagag 42540173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 212 - 479
Target Start/End: Original strand, 34819430 - 34819675
Alignment:
Q  212 gaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggcc 311  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||                      ||||||||||| |||||| | |    
T  34819430 gaaagtgttgttggtgttgttcttattttccagaaaatgggggaagaagatgaaga----------------------aaataaattaagtttttcagtc 34819507  T
Q  312 aatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaaca 411  Q
    ||||||||||||||| |||||||| |||||||        ||||||||||||||||  |||||||||||||||| ||||||||||||||||||  |||||    
T  34819508 aatgccaaaatgacatgtggatagtagttaacgttttttgattaaaactaacggaatggaccaaaacatgtaacagagataaagataaagtacctaaaca 34819607  T
Q  412 annnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    |          ||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  34819608 accttttttttacttaaggaaccaaatcaataccaaataataacttaagggacgaaaagagcaattaa 34819675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 212 - 471
Target Start/End: Complemental strand, 17509714 - 17509475
Alignment:
Q  212 gaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggcc 311  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||                      |||||||||| |||||| |||    
T  17509714 gaaagtgttgttggtgttgttcttatttttcagaaaatgggggaagaagatgaaaaa----------------------aataaattaagtttttcagcc 17509637  T
Q  312 aatgccaaaatgacacgtggatagcagttaac--annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaa 409  Q
     ||| |||||||||||||||||||||||||||          ||||||| ||||||||||||| |||||||||||||||||||||||||||||||  |||    
T  17509636 gatgtcaaaatgacacgtggatagcagttaacgtttttttatattaaaattaacggaagagactaaaacatgtaacggagataaagataaagtacccaaa 17509537  T
Q  410 caannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaaga 471  Q
    |||          ||| |||  ||||||||||||||||||||||||||||||||||||||||    
T  17509536 caattttgtttttactgaagggaccaaagcgataccaaataataacttaagggacgaaaaga 17509475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 42540564 - 42540527
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42540564 ggtgttgaagatgatttgattttgtttggagatttgtc 42540527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 34817453 - 34817409
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  34817453 taacggaagggaccaaaacaggtaacggagataaagataaagtac 34817409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 32304634 - 32304599
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttg 113  Q
    ||||||||||||||||||||||||||||||||||||    
T  32304634 ggtgttgaagatgatttgattttgtttggagatttg 32304599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 29076850 - 29076801
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt 554  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||| |||||    
T  29076850 ttctttccttatactttcattcctttcacattctttccttaaactttctt 29076801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 17509836 - 17509800
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgt 114  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17509836 ggtgttgaagatgatttgattttgtttgtagatttgt 17509800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 17514645 - 17514689
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| |||| |||||||||||||||||||    
T  17514645 taacggaagggaccaaaacaggtaatggagataaagataaagtac 17514689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 32305206 - 32305250
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  32305206 taacggaagggaccaaaacaggtaacggagatgaagataaagtac 32305250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 34817961 - 34817997
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgt 114  Q
    ||||||||||||||||||||||||||| |||||||||    
T  34817961 ggtgttgaagatgatttgattttgtttagagatttgt 34817997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 491
Target Start/End: Original strand, 13301964 - 13302023
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaacctatattaaa 491  Q
    ||||||||||||||||||||  ||||||||||| ||||||||  |||| |||||| ||||    
T  13301964 accaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcctataataaa 13302023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 491
Target Start/End: Original strand, 13312620 - 13312679
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaacctatattaaa 491  Q
    ||||||||||||||||||||  ||||||||||| ||||||||  |||| |||||| ||||    
T  13312620 accaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcctataataaa 13312679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 43464862 - 43464821
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  43464862 accaaagcgataccaaataaatacttaagggaccaaaagagc 43464821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 52857293 - 52857334
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  52857293 accaaagcgataccaaataaatacttaagggaccaaaagagc 52857334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 33772120 - 33772072
Alignment:
Q  352 attaaaactaacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    |||||||||||||||| |||||||||  ||||||||| |||||| ||||    
T  33772120 attaaaactaacggaaaagaccaaaatgtgtaacggaaataaagttaaa 33772072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 53228222 - 53228262
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagag 472  Q
    ||||||||||||||||||||  ||||||||||| |||||||    
T  53228222 accaaagcgataccaaataaatacttaagggaccaaaagag 53228262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 1e-92; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 209 - 484
Target Start/End: Complemental strand, 12260719 - 12260444
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  12260719 catgaaagtgttgttggtggtgttcttattttccagaaaatgggggaataagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 12260620  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    ||||||| |||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||    
T  12260619 gccaatgtcaaaatgacacgtggatagcagttaacgtttttttattaaaactaacggaagggaccaaaacatgtaacagagataaagataaagtaccaaa 12260520  T
Q  409 acaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaaccta 484  Q
    ||||          |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  12260519 acaatcttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagccta 12260444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 209 - 472
Target Start/End: Complemental strand, 20745859 - 20745595
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  20745859 catgaatgtgttgttggtggtgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 20745760  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaac--annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaa 406  Q
     || |||||||||||||||||||||||||||||||          ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |    
T  20745759 acc-atgccaaaatgacacgtggatagcagttaacgttttttttgattaaaactaatggaagggaccaacacatgtaacggagataaagataaagtacca 20745661  T
Q  407 aaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagag 472  Q
    ||||||          |||||||  | |||||||||||||||||||||||||||||||||||||||    
T  20745660 aaacaatcttttttttacttaagggatcaaagcgataccaaataataacttaagggacgaaaagag 20745595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 209 - 412
Target Start/End: Original strand, 27129664 - 27129867
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  27129664 catgaaagtgttgttagtggtgttcttattttccggaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 27129763  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||| ||||| ||||||||||||||||||||||||||||||||||  |||    
T  27129764 gccaatgccaaaatgacacgtggatagcagttaacgttttttgattaaaactaatggaagggaccaaaacatgtaacggagataaagataaagtatcaaa 27129863  T
Q  409 acaa 412  Q
    ||||    
T  27129864 acaa 27129867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 12260849 - 12260812
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12260849 ggtgttgaagatgatttgattttgtttggagatttgtc 12260812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 16146772 - 16146809
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16146772 ggtgttgaagatgatttgattttgtttggagatttgtc 16146809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 20745987 - 20745950
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20745987 ggtgttgaagatgatttgattttgtttggagatttgtc 20745950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 483
Target Start/End: Original strand, 27129896 - 27129939
Alignment:
Q  440 gataccaaataataacttaagggacgaaaagagccattaaacct 483  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  27129896 gataccaaataataacttaagggacgaaaagaccaattaaacct 27129939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 27129537 - 27129574
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    |||||||||||| |||||||||||||||||||||||||    
T  27129537 ggtgttgaagatcatttgattttgtttggagatttgtc 27129574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 10998846 - 10998802
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||    
T  10998846 taacagaagagaccaaaacaggtaacggagataaaaataaagtac 10998802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 12261426 - 12261470
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  12261426 taacggaagggaccaaaacaggtaacggagatgaagataaagtac 12261470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 17163849 - 17163884
Alignment:
Q  254 gaagaagatgaagaatttaagtggagaagatgaaga 289  Q
    |||||||||||||| |||||||||||||||||||||    
T  17163849 gaagaagatgaagactttaagtggagaagatgaaga 17163884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 17163873 - 17163945
Alignment:
Q  256 agaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggccaatgccaaaatgacacgtg 330  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| || |||||   |||||||| |||||||||||    
T  17163873 agaagatgaaga-tttaagtggaaaagatgaggaaaataaatt-aagttttcactcaatgccataatgacacgtg 17163945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 12586860 - 12586901
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||| ||||||||||||  ||||||||||||||||||||    
T  12586860 accaaagtgataccaaataaatacttaagggacgaaaagagc 12586901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 29435108 - 29435059
Alignment:
Q  435 aaagcgataccaaataataacttaagggacgaaaagagccattaaaccta 484  Q
    |||| ||||| |||||| |||||||||||| |||||||| ||||||||||    
T  29435108 aaagtgatactaaataaaaacttaagggacaaaaagagcaattaaaccta 29435059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 901539 - 901495
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||  |||||||| | ||||||||||||||||||||||||    
T  901539 taacggaaaggaccaaaataggtaacggagataaagataaagtac 901495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 902690 - 902734
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||  |||||||| | ||||||||||||||||||||||||    
T  902690 taacggaaaggaccaaaataggtaacggagataaagataaagtac 902734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 16146199 - 16146155
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||||    
T  16146199 taacggaagggaccaaaacaggtaacgaagatgaagataaagtac 16146155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 3e-90; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 213 - 484
Target Start/End: Original strand, 40681290 - 40681561
Alignment:
Q  213 aaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggcca 312  Q
    |||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  40681290 aaagtgttgttggtggtgttcttattttccagaaaatggaggacgaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttcagcca 40681389  T
Q  313 atgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaa 412  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  40681390 atgccaaaatgacacgtggatagcagttaacgtttttttattaaaactaacggaagggaccaaaacatgtaacagagataaagataaagtaccaaaacaa 40681489  T
Q  413 nnnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaaccta 484  Q
              |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  40681490 tcttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagccta 40681561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 209 - 483
Target Start/End: Complemental strand, 9086566 - 9086286
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||     
T  9086566 catgaaagtgttgttggtggtgttcttattttccggaaaatgggggaagaagatgaagaatttaagtggagaagatgaataaaataaatttagtttttca 9086467  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    |||||||||||||||||||||||||||||| ||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  9086466 gccaatgccaaaatgacacgtggatagcaggtaacgttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaa 9086367  T
Q  409 acaa------nnnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacct 483  Q
    ||||                |||||||  |||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  9086366 acaatcttttttttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagaaattaaacct 9086286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 505 - 627
Target Start/End: Original strand, 50465856 - 50465979
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaagataccctaaatgtgtaattttacattatctcgtaaag 603  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  50465856 ttcttttcttatattttcatttctttcactttctttccttacacattcttctgcaaaccaaagatacactaaatgtgtaattttacattatcttgtaaag 50465955  T
Q  604 gtgttagacacgtgattttcattt 627  Q
    ||||||||||||||||||||||||    
T  50465956 gtgttagacacgtgattttcattt 50465979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 565
Target Start/End: Complemental strand, 523347 - 523289
Alignment:
Q  508 tttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaa 565  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  523347 tttccttatactttcattcctttcactttctttccttaaacattcttctgcaaaccaaa 523289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 53596085 - 53596196
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||  ||||||          | ||||| ||||||| |||||||||||||  ||||||    
T  53596085 taacagaagagaccaaaacaggtaacggagataaagataaagtactcaaacaatcttttttttagttaaggaaccaaaacgataccaaataaatacttaa 53596184  T
Q  460 gggacgaaaaga 471  Q
    ||||| ||||||    
T  53596185 gggaccaaaaga 53596196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 573
Target Start/End: Complemental strand, 5788047 - 5787978
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaagataccct 573  Q
    ||||||||||||| ||||||| |||| |||||||||||||| || ||||| ||||||||||| |||||||    
T  5788047 ttctttccttatactttcattcctttaactttctttccttacactttcttatgcaaaccaaacataccct 5787978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 40681151 - 40681188
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40681151 ggtgttgaagatgatttgattttgtttggagatttgtc 40681188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 2734919 - 2734875
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||    
T  2734919 taacagaagagaccaaaacaggtaacggagatgaagataaagtac 2734875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 11816690 - 11816730
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  11816690 taacggaagggaccaaaacaggtaacggagataaagataaa 11816730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 26281186 - 26281230
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||    
T  26281186 taacggaagggaccaaaataggtaacggagataaagataaagtac 26281230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 50282868 - 50282912
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  50282868 taacggaagggaccaaaacaggtaacagagataaagataaagtac 50282912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 701683 - 701636
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    ||||||||||||||||| ||||| |||||||||||||| ||| |||||    
T  701683 accaaagcgataccaaaaaataagttaagggacgaaaatagcaattaa 701636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 769982 - 769935
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    ||||||||||||||||| ||||| |||||||||||||| ||| |||||    
T  769982 accaaagcgataccaaaaaataagttaagggacgaaaatagcaattaa 769935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 12096547 - 12096601
Alignment:
Q  275 tggagaagatgaagaaaataaattaaatttttcggccaatgccaaaatgacacgtg 330  Q
    |||||||||||||||||||||||| || ||||| |||||| | |||||||||||||    
T  12096547 tggagaagatgaagaaaataaattcaa-ttttcagccaatactaaaatgacacgtg 12096601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 451
Target Start/End: Complemental strand, 45044480 - 45044399
Alignment:
Q  370 gaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataa 451  Q
    |||||||||| ||||||||||||||||||||||||  ||||||          | |||||| ||||||||||||||||||||    
T  45044480 gaccaaaacaggtaacggagataaagataaagtactcaaacaatcttttttttagttaagagaccaaagcgataccaaataa 45044399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 44182674 - 44182640
Alignment:
Q  370 gaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||||||||| ||||||||||||||||||||||||    
T  44182674 gaccaaaacaggtaacggagataaagataaagtac 44182640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 9086696 - 9086659
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  9086696 ggtgttgaagatgatttgattctgtttggtgatttgtc 9086659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 14251246 - 14251205
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  14251246 accaaagcgataccaaataaatacttaagggaccaaaagagc 14251205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 487
Target Start/End: Complemental strand, 14947233 - 14947180
Alignment:
Q  434 caaagcgataccaaataataacttaagggacgaaaagagccattaaacctatat 487  Q
    |||||||||||||| |||  ||||||||||| ||||||||  ||||||||||||    
T  14947233 caaagcgataccaattaaatacttaagggaccaaaagagcatttaaacctatat 14947180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 484
Target Start/End: Original strand, 757507 - 757559
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaaccta 484  Q
    ||||||||||||||||| ||||| |||||||| ||||| ||| ||||| ||||    
T  757507 accaaagcgataccaaaaaataagttaagggatgaaaatagcaattaagccta 757559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 2735459 - 2735419
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagag 472  Q
    ||||||| ||||||||||||  |||||||||||||||||||    
T  2735459 accaaagtgataccaaataaatacttaagggacgaaaagag 2735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 9087296 - 9087340
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| ||||||||||  |||||||||| ||||||||||||    
T  9087296 taacggaagggaccaaaacagataacggagatgaagataaagtac 9087340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 11815983 - 11815939
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| |||| |||||||||| ||||||||||||||||||| ||||    
T  11815983 taacagaagggaccaaaacaggtaacggagataaagataatgtac 11815939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 40680587 - 40680543
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||||    
T  40680587 taacggaagggaccaaaacaggtaacgaagatgaagataaagtac 40680543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 44183742 - 44183786
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||  |||||||||| ||||| ||||||||||||||||||    
T  44183742 taacggaatggaccaaaacaggtaacagagataaagataaagtac 44183786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 1e-89; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 209 - 482
Target Start/End: Complemental strand, 40468320 - 40468046
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  40468320 catgaaagtgttgttggtggtgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 40468221  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaac-annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaa 407  Q
    ||||||| ||||||||||| |||||||||||||||         ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||    
T  40468220 gccaatgacaaaatgacacatggatagcagttaacgtttttttgattaaaactaacggaagggaccaaaacatgtatcggagataaagataaagtaccaa 40468121  T
Q  408 aacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacc 482  Q
    |||||          |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40468120 aacaatcttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaaacc 40468046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 211 - 491
Target Start/End: Original strand, 28190272 - 28190555
Alignment:
Q  211 tgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggc 310  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |     
T  28190272 tgaaagtgttgttagtggtgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaaaaaaataaattaagtttttcagt 28190371  T
Q  311 caatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaac 410  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  28190372 caatgccaaaatgacacgtggatagcagttaacatttttttattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 28190471  T
Q  411 aa---nnnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacctatattaaa 491  Q
    ||             |||||||  ||||||  |||||||||||||||||||||||||||||| ||| ||||| |||||| ||||    
T  28190472 aatctttttttttttacttaagggaccaaaatgataccaaataataacttaagggacgaaaaaagcaattaagcctataataaa 28190555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 209 - 479
Target Start/End: Complemental strand, 19297801 - 19297530
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  19297801 catgaatgtgttgttggtggtgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 19297702  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaac-annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaa 407  Q
    ||||||||||||||||||||||| |||||||||||         ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||| ||    
T  19297701 gccaatgccaaaatgacacgtgggtagcagttaacgtttttttgattaaaattaaaggaagggaccaaaacatgtaacagagataaaaataaagtaccaa 19297602  T
Q  408 aacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    |||||          |||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  19297601 aacaatcttttttttacttaagggaccaaaacgataccaaataataacttaagggacgaaaagagcaattaa 19297530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 209 - 479
Target Start/End: Complemental strand, 8029239 - 8028969
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  8029239 catgaaagtgttgttggtggtgttcttattctccagaaaatgggggaggaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 8029140  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||  | ||||||||| ||||||||||||||||||||||| |||    
T  8029139 gccaatgccaaaatgacacgtggatagcagttaacgttttttgattaaaactaacggaacgggccaaaacatctaacggagataaagataaagtaccaaa 8029040  T
Q  409 acaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    ||||          ||| |||  ||||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  8029039 acaattttttttttactcaagggaccaaagcgataccaaataataacttaagagacggaaatagcaattaa 8028969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 209 - 484
Target Start/End: Original strand, 20686479 - 20686737
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                      |||||| |||| ||||||     
T  20686479 catgaaagtgttgttggtggtgttcttattttccagaaaatgggggaagaagatgaaga----------------------aaataatttaagtttttca 20686556  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaac-annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaa 407  Q
    || ||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  20686557 gctaatgccaaaatgacacgtggatagcagttaacgtttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaa 20686656  T
Q  408 aacaa----nnnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaaccta 484  Q
    |||||              |||||||  |||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||    
T  20686657 aacaatcttttctttttttacttaagggaccaaagcaataccaaataataacttaagggacgaaaaaagcaattaagccta 20686737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 10709300 - 10709411
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    ||||||||| |||||||||||||||||||||| |||||||||||   ||||||          |||||||  |||||| ||||||| |||||||||||||    
T  10709300 taacggaagggaccaaaacatgtaacggagatcaagataaagtatccaaacaatcttttttttacttaagggaccaaatcgatacctaataataacttaa 10709399  T
Q  460 gggacgaaaaga 471  Q
    ||||| ||||||    
T  10709400 gggacaaaaaga 10709411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 29519280 - 29519236
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  29519280 taacggaagagaccaaaacaagtaacggagataaagataaagtac 29519236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 8029369 - 8029332
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8029369 ggtgttgaagatgatttgattttgtttggagatttgtc 8029332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 20686324 - 20686361
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20686324 ggtgttgaagatgatttgattttgtttggagatttgtc 20686361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 19297932 - 19297895
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    |||||||||||||||||||||||||||| |||||||||    
T  19297932 ggtgttgaagatgatttgattttgtttgaagatttgtc 19297895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 8029945 - 8029989
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  8029945 taacggaagggaccaaaacaggtaacggagatgaagataaagtac 8029989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 28189569 - 28189525
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  28189569 taacggaagggaccaaaacaggtaacggagatgaagataaagtac 28189525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 11131192 - 11131233
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  11131192 accaaagcgataccaaataaatacttaagggactaaaagagc 11131233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 40468449 - 40468413
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  40468449 ggtgttgaa-atgatttgattttgtttggagatttgtc 40468413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 473
Target Start/End: Complemental strand, 677441 - 677393
Alignment:
Q  425 ttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||||| |||  | ||||||||| ||||||||    
T  677441 ttaagaaaccaaagcgataccaattaaatagttaagggaccaaaagagc 677393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 8885780 - 8885740
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||| |||||||||| |||||||||||||| |||||    
T  8885780 taacggaagggaccaaaacaggtaacggagataaatataaa 8885740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 8892997 - 8893037
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  8892997 taacggaagagaccaaaataggtaacgaagataaagataaa 8893037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 16330774 - 16330814
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    |||| |||| |||||||||| ||||||||||||||||||||    
T  16330774 taacagaagggaccaaaacaggtaacggagataaagataaa 16330814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 19298505 - 19298549
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||| ||| ||||||||||||    
T  19298505 taacggaagggaccaaaacaggtaacggtgatgaagataaagtac 19298549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 20685751 - 20685707
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||| |||||||||||||| ||||||| ||| ||||||||||||    
T  20685751 taacgaaagagaccaaaacaggtaacggtgatgaagataaagtac 20685707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 40469033 - 40469077
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||||    
T  40469033 taacggaagggaccaaaacaggtaacgaagatgaagataaagtac 40469077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 7e-88; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 209 - 483
Target Start/End: Original strand, 23083364 - 23083639
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||     
T  23083364 catgaaagtgttgttggtggcgttcttattttccagaaaatggggaaagaagatgaagaatttaagtgaagaagatgaagaaaataaattaagtttttca 23083463  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaac-annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaa 407  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  23083464 gccaatgccaaaatgacacgtggatagcagttaacgtttttttgattaaaactaacggaagagaccaaaacatgtaacagagataaagataaagtaccaa 23083563  T
Q  408 aacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacct 483  Q
    |||||          |||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  23083564 aacaatcttttttttacttaagggaccaaaacgataccaaataataacttaagggacgaaaagagcaattaaacct 23083639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 209 - 479
Target Start/End: Complemental strand, 6794018 - 6793770
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||                      ||||||||||  ||||||     
T  6794018 catgaaagtgttgttagtggtgttcttattttccagaaaatgggggaagaagatgaaga----------------------aaataaattatgtttttca 6793941  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    ||||||||||||||||||||||||||||| |||||        | ||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||    
T  6793940 gccaatgccaaaatgacacgtggatagcaattaacgtttttttagtaaaactaacggaagggaccaaaccatgtaacagagataaagataaagtaccaaa 6793841  T
Q  409 acaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    ||||          |||||||  ||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  6793840 acaatcttttttttacttaagggaccaaagtgataccaaataataacttaagggacaaaaagagcaattaa 6793770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 6794146 - 6794109
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6794146 ggtgttgaagatgatttgattttgtttggagatttgtc 6794109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 469
Target Start/End: Original strand, 24042615 - 24042724
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    ||||||||| |||||||||| |||||||||||||||||||| |||  ||||||          | |||||  ||||||||||||||||||||  ||||||    
T  24042615 taacggaagggaccaaaacaggtaacggagataaagataaaatactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaa 24042714  T
Q  460 gggacgaaaa 469  Q
    ||||| ||||    
T  24042715 gggaccaaaa 24042724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 473
Target Start/End: Original strand, 30645663 - 30645776
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||  ||||||          | |||||  ||||||||||||||||||||  ||||||    
T  30645663 taacagaagggaccaaaacaggtaacagagataaagataaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaa 30645762  T
Q  460 gggacgaaaagagc 473  Q
    ||||| ||||||||    
T  30645763 gggaccaaaagagc 30645776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 473
Target Start/End: Complemental strand, 14347521 - 14347410
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||  ||||||          | |||||  ||||||||||||||||||||  ||||||    
T  14347521 taacggaaggggccaaaacaggtaacggagataaagataaagtactcaaacaa--ttttttttagttaagggaccaaagcgataccaaataaatacttaa 14347424  T
Q  460 gggacgaaaagagc 473  Q
    ||||| ||||||||    
T  14347423 gggaccaaaagagc 14347410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 23083234 - 23083271
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  23083234 ggtgttgaagatgatttgactttgtttggagatttgtc 23083271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 28905393 - 28905504
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||  ||||||          | |||||  ||||||||||||||||||||  ||||||    
T  28905393 taacagaagggaccaaaacaggtaacagagataaagataaagtactcaaacaattttttttttagttaagggaccaaagcgataccaaataaatacttaa 28905492  T
Q  460 gggacgaaaaga 471  Q
    ||||| ||||||    
T  28905493 gggaccaaaaga 28905504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 28941788 - 28941899
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||  ||||||          | |||||  ||||||||||||||||||||  ||||||    
T  28941788 taacagaagggaccaaaacaggtaacagagataaagataaagtactcaaacaattttttttttagttaagggaccaaagcgataccaaataaatacttaa 28941887  T
Q  460 gggacgaaaaga 471  Q
    ||||| ||||||    
T  28941888 gggaccaaaaga 28941899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 13823822 - 13823782
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  13823822 taacggaagggaccaaaacaggtaacggagataaagataaa 13823782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 23082660 - 23082616
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  23082660 taacggaagggaccaaaacaggtaacggagatgaagataaagtac 23082616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 24041860 - 24041820
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  24041860 taacggaagggaccaaaacaggtaacggagataaagataaa 24041820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 38384990 - 38384946
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||    
T  38384990 taacggaagggaccaaaacaggtagcggagataaagataaagtac 38384946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 488
Target Start/End: Original strand, 19798657 - 19798784
Alignment:
Q  361 aacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaag 460  Q
    |||||||| |||| |||||  |||| ||||||||||||||||||  ||||||          | |||||  ||||||| ||||||||||||  |||||||    
T  19798657 aacggaagggaccgaaacagataacagagataaagataaagtactcaaacaatcttttttttagttaagggaccaaagtgataccaaataaatacttaag 19798756  T
Q  461 ggacgaaaagagccattaaacctatatt 488  Q
    |||| ||||||||  |||| ||||||||    
T  19798757 ggaccaaaagagcatttaagcctatatt 19798784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 6794715 - 6794759
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| ||||||||||  |||||||||| ||||||||||||    
T  6794715 taacggaagggaccaaaacagataacggagatgaagataaagtac 6794759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 13824582 - 13824622
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  13824582 taacggaatggaccaaaacaggtaacggagataaagataaa 13824622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 37191715 - 37191671
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| ||||||||||||||| ||||  ||||||||||||||||||    
T  37191715 taacagaagagaccaaaacaggtaatagagataaagataaagtac 37191671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 39547978 - 39548018
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagag 472  Q
    ||||||| ||||||||||||  |||||||||||||||||||    
T  39547978 accaaagtgataccaaataaatacttaagggacgaaaagag 39548018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 39548536 - 39548580
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  39548536 taacagaagagaccaaaacaggtaacagagatgaagataaagtac 39548580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 42766939 - 42766895
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| |||||||||||||| |||| ||||    
T  42766939 taacggaagggaccaaaacaggtaacggagataaatataatgtac 42766895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 42767629 - 42767673
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| |||| |||||||||| |||| |||||||||||||||||||    
T  42767629 taacagaagggaccaaaacaggtaatggagataaagataaagtac 42767673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 4e-86; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 209 - 485
Target Start/End: Original strand, 36142920 - 36143196
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||      
T  36142920 catgaaagtgttgttggtgatgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaaaatgaagaaaataaattaagtttttta 36143019  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||  ||||||||||||||||||||||||||||||| ||| |||    
T  36143020 gccaatgccaaaatgacacgtggatagcagttaacgtttttttattaaaactaacggaatggaccaaaacatgtaacggagataaagataaaataccaaa 36143119  T
Q  409 acaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacctat 485  Q
    ||||          |||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  36143120 acaatcttttttttacttaagggaccaaatcgataccaaataataacttaagggacgaaaagagcaattaagcctat 36143196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 209 - 479
Target Start/End: Original strand, 35122983 - 35123252
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  35122983 catgaaagtgttgttggtggtgttcttattttctagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 35123082  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    | |||||||||||||||||||||||| || ||||         ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||    
T  35123083 gtcaatgccaaaatgacacgtggataacaattaa-ttttttttattaaaactaacggaagggaccaaaacatgtaacgaagataaagataaaataccaaa 35123181  T
Q  409 acaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    ||||          |||||||  ||||||  |||||||||||||||||||||| | ||||| ||| |||||    
T  35123182 acaatcttttttttacttaagggaccaaaatgataccaaataataacttaaggaaggaaaatagctattaa 35123252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 253 - 479
Target Start/End: Original strand, 47112942 - 47113169
Alignment:
Q  253 ggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggccaatgccaaaatgacacgtggatagcagttaac-annnnnnn 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||             
T  47112942 ggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttcagccaatgtcaaaatgacacgtggatagcagttaacgtttttttt 47113041  T
Q  352 attaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataa 451  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||          |||||||  | ||||||||||||||||||    
T  47113042 attaaaattaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaataatcttttttttacttaagggatcaaagcgataccaaataa 47113141  T
Q  452 taacttaagggacgaaaagagccattaa 479  Q
    |||||||||||||||||||||| |||||    
T  47113142 taacttaagggacgaaaagagcaattaa 47113169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 212 - 404
Target Start/End: Original strand, 49653498 - 49653705
Alignment:
Q  212 gaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggcc 311  Q
    ||||||||||||| || |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  49653498 gaaagtgttgttgatgttgttcttattttccaaaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttcagcc 49653597  T
Q  312 aatgc--------------caaaatgacacgtggatagcagttaaca-nnnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaaga 396  Q
    |||||              | |||||||||||||||| |||||||||        |||||||||||| ||||  |||||||||||||||||||||||| |    
T  49653598 aatgctaaatcagccaatgctaaatgacacgtggataacagttaacatttttttgattaaaactaacagaaggaaccaaaacatgtaacggagataaata 49653697  T
Q  397 taaagtac 404  Q
    ||||||||    
T  49653698 taaagtac 49653705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 576
Target Start/End: Original strand, 9239528 - 9239600
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaagataccctaaa 576  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  9239528 ttctttccttatactttcattcctttcactttctttccttaaacattcttctgcaaaccaagcataccctaaa 9239600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 505 - 565
Target Start/End: Complemental strand, 48651676 - 48651615
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaa 565  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  48651676 ttcttcccttatactttcattcctttcactttctttccttaaacattcttctgcaaaccaaa 48651615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 479
Target Start/End: Original strand, 49964093 - 49964203
Alignment:
Q  372 ccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnn---acttaagaaaccaaagcgataccaaataataacttaagggacgaaa 468  Q
    |||||||||||||| |||||||||||||||||| |||||||             |||||||  ||||||| |||||||||||||||||||||||| ||||    
T  49964093 ccaaaacatgtaacagagataaagataaagtaccaaaacaatctttttttttttacttaagggaccaaagtgataccaaataataacttaagggatgaaa 49964192  T
Q  469 agagccattaa 479  Q
    ||||| |||||    
T  49964193 agagcaattaa 49964203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 35122872 - 35122909
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35122872 ggtgttgaagatgatttgattttgtttggagatttgtc 35122909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 36142810 - 36142847
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36142810 ggtgttgaagatgatttgattttgtttggagatttgtc 36142847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 29022485 - 29022529
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  29022485 taacggaagggaccaaaacaggtaacggagataaagataaagtac 29022529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 49653361 - 49653397
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgt 114  Q
    |||||||||||||||||||||||||||||||||||||    
T  49653361 ggtgttgaagatgatttgattttgtttggagatttgt 49653397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 16659840 - 16659951
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||  ||||||          | |||||  ||||||||||||||||||||  ||||||    
T  16659840 taacagaagggaccaaaacaggtaacagagataaagataaagtactcaaacaattttttttttagttaagggaccaaagcgataccaaataaatacttaa 16659939  T
Q  460 gggacgaaaaga 471  Q
    ||||| ||||||    
T  16659940 gggaccaaaaga 16659951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 47112787 - 47112824
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  47112787 ggtgttgaagatgatttgattttgtttagagatttgtc 47112824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 24326704 - 24326660
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||    
T  24326704 taacggaagggaccaaaataggtaacggagataaagataaagtac 24326660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 24332250 - 24332294
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||    
T  24332250 taacggaagggaccaaaataggtaacggagataaagataaagtac 24332294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 36142232 - 36142188
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||    
T  36142232 taacggaaaggaccaaaacaggtaacggagataaagataaagtac 36142188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 47112216 - 47112176
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  47112216 taacggaagagaccaaaacaggtaacggagatgaagataaa 47112176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 491
Target Start/End: Original strand, 5805986 - 5806045
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaacctatattaaa 491  Q
    |||||| |||||||||||||  ||||||| ||| ||||||||  ||||||||||||||||    
T  5805986 accaaaacgataccaaataaatacttaagagaccaaaagagcatttaaacctatattaaa 5806045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 487
Target Start/End: Original strand, 6328338 - 6328393
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaaacctatat 487  Q
    |||||||||||||||| |||  ||||||||||| |||||||| ||||| |||||||    
T  6328338 accaaagcgataccaattaaatacttaagggaccaaaagagcaattaagcctatat 6328393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 50124537 - 50124580
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagta 403  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  50124537 taacggaaaggaccaaaacaggtaacggagataaagataaagta 50124580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 51598011 - 51597964
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    ||||||||||||||||| ||||| |||||||||||||| ||| |||||    
T  51598011 accaaagcgataccaaaaaataagttaagggacgaaaatagcaattaa 51597964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 7964234 - 7964196
Alignment:
Q  362 acggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  7964234 acggaagggaccaaaacaggtaacggagataaagataaa 7964196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 7965447 - 7965485
Alignment:
Q  362 acggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  7965447 acggaagggaccaaaacaggtaacggagataaagataaa 7965485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 473
Target Start/End: Original strand, 10719640 - 10719682
Alignment:
Q  431 aaccaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    |||||||||||||||||||||  ||||||||||| ||||||||    
T  10719640 aaccaaagcgataccaaataaatacttaagggaccaaaagagc 10719682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 24508322 - 24508288
Alignment:
Q  370 gaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||||||||| ||||||||||||||||||||||||    
T  24508322 gaccaaaacaggtaacggagataaagataaagtac 24508288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 5804743 - 5804702
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  5804743 accaaagcgataccaaataaatacttaagggaccaaaagagc 5804702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 5805913 - 5805957
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| |||||||||||||||  |||| ||||||||||||||||||    
T  5805913 taacagaagagaccaaaacagataacagagataaagataaagtac 5805957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 29021704 - 29021660
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||    
T  29021704 taacagaagggaccaaaacaggtaacagagataaagataaagtac 29021660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 31698221 - 31698265
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| ||||||||||||| |  |||||||||||||||||||||||    
T  31698221 taacagaagagaccaaaatagctaacggagataaagataaagtac 31698265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 38658812 - 38658856
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| |||| |||||||||| |||||||||||||| |||||||||    
T  38658812 taacagaagggaccaaaacaggtaacggagataaatataaagtac 38658856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 52751499 - 52751543
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  52751499 taacggaagggacaaaaacaagtaactgagataaagataaagtac 52751543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 209 - 485
Target Start/End: Original strand, 17279227 - 17279504
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  17279227 catgaaagtgttgttggtggtgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 17279326  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaa 408  Q
    ||||||| |||||||||||||||||||||||||||        ||||||||||||||||  |||||||||||||||  |||||||||||||||||| |||    
T  17279327 gccaatgtcaaaatgacacgtggatagcagttaacgttttttgattaaaactaacggaaatgaccaaaacatgtaatagagataaagataaagtaccaaa 17279426  T
Q  409 acaa-nnnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacctat 485  Q
    ||||           ||||||   |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  17279427 acaatctttttttttacttaaaggaccaaagcgataccaaataataacttaagggatgaaaagagcaattaaacctat 17279504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 209 - 479
Target Start/End: Original strand, 30766468 - 30766739
Alignment:
Q  209 catgaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcg 308  Q
    ||||||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  30766468 catgaaagttttgttagtggtgttctgattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaagtttttca 30766567  T
Q  309 gccaatgccaaaatgacacgtggatagcagttaac-annnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaa 407  Q
     ||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  30766568 accaatgccaaaatgacacgtggatagcagttaacgtttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaa 30766667  T
Q  408 aacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    |||||          |||||||  ||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  30766668 aacaatcttttttttacttaagggaccaaagtgataccaaataataacttaagggacgaaaaaagcaattaa 30766739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 360 - 479
Target Start/End: Original strand, 25445015 - 25445133
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaacaannnnnnnnnnacttaagaaaccaaagcgataccaaataataacttaa 459  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||          |||||||  ||||||| |||| |||||||||||||||    
T  25445015 taacggaag-gaccaaaacatgtaacggagataaagataaagtacacaaacaatcttttttttacttaagggaccaaagtgatatcaaataataacttaa 25445113  T
Q  460 gggacgaaaagagccattaa 479  Q
    |||||||||||||| |||||    
T  25445114 gggacgaaaagagcaattaa 25445133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 17279097 - 17279134
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17279097 ggtgttgaagatgatttgattttgtttggagatttgtc 17279134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 30766340 - 30766377
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30766340 ggtgttgaagatgatttgattttgtttggagatttgtc 30766377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 22056385 - 22056350
Alignment:
Q  78 ggtgttgaagatgatttgattttgtttggagatttg 113  Q
    ||||||||||||||||||||||||||||||||||||    
T  22056385 ggtgttgaagatgatttgattttgtttggagatttg 22056350  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 505 - 579
Target Start/End: Original strand, 37207485 - 37207560
Alignment:
Q  505 ttctttccttatattttcatttctttcactttctttccttaaacattctt-tgcaaaccaaagataccctaaatgt 579  Q
    ||||||| ||||| ||||||| |||||||||| ||||||||||| ||||| | ||||||||| ||||||| |||||    
T  37207485 ttctttctttatactttcattcctttcactttttttccttaaaccttcttctccaaaccaaacatacccttaatgt 37207560  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 17278521 - 17278477
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  17278521 taacggaagggaccaaaacaggtaacggagatgaagataaagtac 17278477  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 30765790 - 30765746
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  30765790 taacggaagggaccaaaacaggtaacggagatgaagataaagtac 30765746  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 42754035 - 42753991
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| |||| |||||||||| ||||||||||||||||||||||||    
T  42754035 taacagaagggaccaaaacaggtaacggagataaagataaagtac 42753991  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 16956042 - 16956008
Alignment:
Q  370 gaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||||||||| ||||||||||||||||||||||||    
T  16956042 gaccaaaacaggtaacggagataaagataaagtac 16956008  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 473
Target Start/End: Complemental strand, 16962903 - 16962853
Alignment:
Q  423 acttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||| || ||||||||||||||||||||  ||||||||||| ||||||||    
T  16962903 acttatgagaccaaagcgataccaaataaatacttaagggaccaaaagagc 16962853  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 17236176 - 17236142
Alignment:
Q  370 gaccaaaacatgtaacggagataaagataaagtac 404  Q
    ||||||||||||||||||||||||| |||||||||    
T  17236176 gaccaaaacatgtaacggagataaaaataaagtac 17236142  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 36986356 - 36986301
Alignment:
Q  269 tttaagtggagaagatgaagaaaataaattaaatttttcggccaatgccaaaatgaca 326  Q
    |||||||||||||||||||||||| ||||| || ||||| |||||||||| |||||||    
T  36986356 tttaagtggagaagatgaagaaaa-aaatt-aagttttcagccaatgccataatgaca 36986301  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 42754586 - 42754545
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||| ||||||||||||  ||||||||||||||||||||    
T  42754586 accaaagtgataccaaataaatacttaagggacgaaaagagc 42754545  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 14682019 - 14681979
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    |||| |||| |||||||||| ||||||||||||||||||||    
T  14682019 taacagaagggaccaaaacaggtaacggagataaagataaa 14681979  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 17238574 - 17238614
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  17238574 taacggaagagaccaaaataggtaacggagacaaagataaa 17238614  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 18297276 - 18297236
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||| |||||||| | ||||||||||||||||||||    
T  18297276 taacggaagggaccaaaataggtaacggagataaagataaa 18297236  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 25443119 - 25443075
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaagtac 404  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||    
T  25443119 taacagaagggaccaaaacagataacggagataaagataaagtac 25443075  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 473
Target Start/End: Original strand, 34621786 - 34621834
Alignment:
Q  425 ttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    |||||| |||||||||||||||| |||  ||||||||||| ||||||||    
T  34621786 ttaagagaccaaagcgataccaattaaatacttaagggaccaaaagagc 34621834  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 45087193 - 45087137
Alignment:
Q  354 taaaactaacggaagagaccaaaacatgtaacggagataaagataaagtacaaaaac 410  Q
    ||||| |||||||| |||||||||||||||||||||  |||| |||| ||| |||||    
T  45087193 taaaattaacggaaaagaccaaaacatgtaacggagcaaaagttaaaataccaaaac 45087137  T

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Target: scaffold0202 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 212 - 403
Target Start/End: Complemental strand, 21498 - 21307
Alignment:
Q  212 gaaagtgttgttggtggtgttcttatttttcagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggcc 311  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21498 gaaagtgttgttggtgttgttcttattttccagaaaatgggggaagaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcagcc 21399  T
Q  312 aatgccaaaatgacacgtggatagcagttaacannnnnnnattaaaactaacggaagagaccaaaacatgtaacggagataaagataaagta 403  Q
    |||| |||||||||| ||| |||| |||| |         |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21398 aatgtcaaaatgacaagtgaatagtagttgatgtttttttattaaaactaacggaagagaccaaaacatgtaacagagataaagataaagta 21307  T

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Target: scaffold0202; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 21283 - 21235
Alignment:
Q  430 aaaccaaagcgataccaaataataacttaagggacgaaaagagccattaa 479  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| |||||    
T  21283 aaaccaaagctatatcaaataataacttaa-ggacgaaaagagcgattaa 21235  T

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Target: scaffold0202; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 21630 - 21598
Alignment:
Q  82 ttgaagatgatttgattttgtttggagatttgt 114  Q
    |||||||||||||||||||||||| ||||||||    
T  21630 ttgaagatgatttgattttgtttgaagatttgt 21598  T

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Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 91309 - 91396
Alignment:
Q  256 agaagatgaagaatttaagtggagaagatgaagaaaataaattaaatttttcggccaatgccaaaatgacacgtggatagcagttaaca 344  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||   |||||||| ||||||||||| | | |||||||||    
T  91309 agaagatgaagaatttaagtggagaataggaagaaaataaatt-aagttttcatgcaatgccataatgacacgtgtacaacagttaaca 91396  T

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Target: scaffold0042; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 90219 - 90159
Alignment:
Q  423 acttaagaaaccaaagcgataccaaataataacttaagggacgaaaagagccattaaacct 483  Q
    |||||||  ||||||| ||||| || ||| |||||||||||| |||||||| |||||||||    
T  90219 acttaagggaccaaagtgatacgaagtaaaaacttaagggacaaaaagagcaattaaacct 90159  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 429020 - 428980
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagag 472  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  429020 accaaagcgataccaaataataacttaagggaccaaaagag 428980  T

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Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 487
Target Start/End: Original strand, 429159 - 429211
Alignment:
Q  435 aaagcgataccaaataataacttaagggacgaaaagagccattaaacctatat 487  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||| |||||||    
T  429159 aaagcgataccaaataataacttaagggaccaaaaaagcaattaagcctatat 429211  T

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Target: scaffold0220 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 26013 - 25972
Alignment:
Q  432 accaaagcgataccaaataataacttaagggacgaaaagagc 473  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  26013 accaaagcgataccaaataaatacttaagggaccaaaagagc 25972  T

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Target: scaffold0192 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 14641 - 14681
Alignment:
Q  360 taacggaagagaccaaaacatgtaacggagataaagataaa 400  Q
    ||||||||| |||||||||| ||||| ||||||||||||||    
T  14641 taacggaagggaccaaaacaggtaacagagataaagataaa 14681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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