View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_22 (Length: 411)
Name: NF20116_low_22
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 46491601 - 46491384
Alignment:
| Q |
8 |
ggaggagcacagagtgaagaccgaagagagctatgcagtagtagtgtggcattaaatgttcgtgtgcccaaccagatttaatgtttaccactatattcct |
107 |
Q |
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| T |
46491601 |
ggaggaacacaaagtgaagaccgaagagagctatgcagtagtagtgtggcattaaatgttcgtgtgcccaaccagatttaatgtttaccactatattcct |
46491502 |
T |
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| Q |
108 |
tctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaataca |
207 |
Q |
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| T |
46491501 |
tctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaataca |
46491402 |
T |
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| Q |
208 |
caagtatgaactcttcgg |
225 |
Q |
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| T |
46491401 |
caagtatgaactcatcgg |
46491384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 243 - 411
Target Start/End: Complemental strand, 46491357 - 46491189
Alignment:
| Q |
243 |
tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat |
342 |
Q |
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| T |
46491357 |
tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat |
46491258 |
T |
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| Q |
343 |
tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttc |
411 |
Q |
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| T |
46491257 |
tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttc |
46491189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 411
Target Start/End: Complemental strand, 46480325 - 46480276
Alignment:
| Q |
362 |
aaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttc |
411 |
Q |
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| T |
46480325 |
aaatcacccagcaagaggattgagcacctgtccaacaaagatgattgttc |
46480276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 46474459 - 46474406
Alignment:
| Q |
358 |
gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttc |
411 |
Q |
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| T |
46474459 |
gctaagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttc |
46474406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 46498760 - 46498700
Alignment:
| Q |
162 |
ttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactctt |
222 |
Q |
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| T |
46498760 |
ttgttaaagaaattagaggaagtctgtcaaaaattattaacatacacaattatgaactctt |
46498700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 46484576 - 46484523
Alignment:
| Q |
358 |
gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttc |
411 |
Q |
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| T |
46484576 |
gctaagatcacccatcaagatgattaagcacatgtccaacaaagatgattgttc |
46484523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 46506843 - 46506876
Alignment:
| Q |
367 |
acccagcaagaggattgaacacctgtccaacaaa |
400 |
Q |
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| T |
46506843 |
acccagcaagaggattgagcacctgtccaacaaa |
46506876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 51944425 - 51944373
Alignment:
| Q |
359 |
ctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttc |
411 |
Q |
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| T |
51944425 |
ctaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttc |
51944373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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