View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_23 (Length: 403)
Name: NF20116_low_23
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 48171733 - 48171354
Alignment:
| Q |
16 |
attattatgataatgaaaaccaacatgattatagttcacaagatgctaaagaaacaaaggagttctactccaagtcaagctgcaaaagcagcaccaaatc |
115 |
Q |
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| T |
48171733 |
attattatgataatgaaaaccaacatgattatagttcacaagatgctaaagaaacaaaggagttctactccaagtcaagctgcaaaagcagcaccaaatc |
48171634 |
T |
|
| Q |
116 |
aaggaaggggaccgtttcttctggccgaaggaacaactccagttcagattcagaaaatgaccacgaaagcagtaggagaaagcatgacgtggatggaagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48171633 |
aaggaaggggaccgtttcttctggccgaaggaacaactccagttcagattcagaaaatgaccacgaaagcagtaggagaaagcatgaagtggatggaagt |
48171534 |
T |
|
| Q |
216 |
ttaactcagaaaagcagcaaaaaatctgctgcaagagatttaagccagaagagcagtaagaaatctacagtaacaaaggatttaagccaaaagagcagta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48171533 |
ttaactcagaaaagcagcaaaaaatctgctgcaagagatttaagccagaagagcagtaagaaatctacggtaacaaaggatttaagccaaaagagcagta |
48171434 |
T |
|
| Q |
316 |
aaaaatcttctgcaagagttgtaagtcgatcatctcatagcagcagcgatgaggagtcacacgatggaggtgttcttctc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171433 |
aaaaatcttctgcaagagttgtaagtcgatcatctcatagcagcagcgatgaggagtcacacgatggaggtgttcttctc |
48171354 |
T |
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