View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_24 (Length: 401)
Name: NF20116_low_24
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 33022114 - 33022343
Alignment:
| Q |
19 |
gtcaatgcatacagattgcttctgctgctcaggggaattttggaatggtcttaaattggtttcgatccttcgtgattgaattcggacagataggctagaa |
118 |
Q |
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| T |
33022114 |
gtcaatgcatacagattgcttctgctgctcaggggaattttggaatggtcttaaattggtttcaatccttcgtgattgaattcggacagataggctagaa |
33022213 |
T |
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| Q |
119 |
acgacctttaacttgctgttgaatagcgaactgtctgtatacagacacgttaccatgttggcggtatggttcaagcgctgttttcaaaagattcaactct |
218 |
Q |
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| T |
33022214 |
acgacctttaacttgctgttgaatagcgaactgtctgtatacagacacgttaccatgttggcggtatggttcaagcgctgttttcaaaagattcaactct |
33022313 |
T |
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| Q |
219 |
aggtgcttttgagctcacactcacagtttta |
249 |
Q |
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| T |
33022314 |
-ggtgcttttcagctcacactcacagtttta |
33022343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 33022341 - 33022463
Alignment:
| Q |
273 |
ttaataaatggacaaatcaatttgtgaacttttttgaggttgtggagacgatttcatgactagttcattatttcagtttactctatggttgaaatttgaa |
372 |
Q |
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| T |
33022341 |
ttaataaatggacaaatcaatttgtgaacttttttgaggttgtggagacgatttcatgactagttcattatttcagtttactctatggttgaaatttgaa |
33022440 |
T |
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| Q |
373 |
acatcgttataacttcttctctc |
395 |
Q |
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| T |
33022441 |
acatcgttataacttcttttctc |
33022463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 33028388 - 33028515
Alignment:
| Q |
23 |
atgcatacagattgcttctgctgctcaggggaattttggaatggtcttaaattggtttcgatccttcgtgattgaattcggacagataggctagaaacga |
122 |
Q |
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| T |
33028388 |
atgcatacagattgcttctgtcgctctggggaattttggaatggtcttaaatttgtttcgatcctttgtgattggatccagacagataggctagaaatga |
33028487 |
T |
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| Q |
123 |
cctttaacttgctgttgaatagcgaact |
150 |
Q |
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| T |
33028488 |
ccttttatttgttgttgaatagtgaact |
33028515 |
T |
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