View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_low_25 (Length: 401)

Name: NF20116_low_25
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_low_25
NF20116_low_25
[»] chr2 (4 HSPs)
chr2 (227-340)||(7719612-7719724)
chr2 (1-145)||(7719391-7719531)
chr2 (369-401)||(28823990-28824022)
chr2 (292-339)||(42962700-42962746)
[»] chr4 (2 HSPs)
chr4 (369-401)||(30562358-30562390)
chr4 (369-401)||(54902151-54902183)
[»] chr1 (1 HSPs)
chr1 (239-309)||(19020111-19020179)
[»] chr8 (1 HSPs)
chr8 (242-309)||(10872785-10872850)
[»] chr5 (2 HSPs)
chr5 (369-401)||(540434-540466)
chr5 (237-305)||(42147539-42147606)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 227 - 340
Target Start/End: Original strand, 7719612 - 7719724
Alignment:
Q  227 atatgaaatatgatgttttcattagattatttcttaacatgataaaaattattatcttctcaaccaaattattttcacacttttaagaatttaagttttt 326  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  7719612 atatgaaatatgatgttttcattagattatattttaacgtgataaaaattattatcttctcaaccaaattattttcacac-tttaagaatttaaattttt 7719710  T
Q  327 tatatgtttattaa 340  Q
    ||||||||||||||    
T  7719711 tatatgtttattaa 7719724  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 7719391 - 7719531
Alignment:
Q  1 tatacctatgatgaaagaaattttacttgtggaattttactgttactttctatatacttggtgctatagctacggcaagaggactttatctacaaaaatt 100  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||     |||| ||||||    
T  7719391 tatacctatgatgaaagaaattttacttgtggaaatttattgttactttctatatacttggtgctatagctacggcaagaggac-----ctacgaaaatt 7719485  T
Q  101 tattgtccctaaatgtcaag-tttcttgtagtggaagtgggggatc 145  Q
    |||||||  ||||||||||| ||| ||||||||||| |||| ||||    
T  7719486 tattgtcattaaatgtcaagtttttttgtagtggaaatgggagatc 7719531  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 28824022 - 28823990
Alignment:
Q  369 aaggtccaactgtggtccttctaatatgacctg 401  Q
    |||||||||||||||||||||||||||||||||    
T  28824022 aaggtccaactgtggtccttctaatatgacctg 28823990  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 42962746 - 42962700
Alignment:
Q  292 aaattattttcacacttttaagaatttaagttttttatatgtttatta 339  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||    
T  42962746 aaattattttcacacttt-aagaatttaatttttttatatatttatta 42962700  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 30562390 - 30562358
Alignment:
Q  369 aaggtccaactgtggtccttctaatatgacctg 401  Q
    |||||||||||||||||||||||||||||||||    
T  30562390 aaggtccaactgtggtccttctaatatgacctg 30562358  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 54902183 - 54902151
Alignment:
Q  369 aaggtccaactgtggtccttctaatatgacctg 401  Q
    |||||||||||||||||||||||||||||||||    
T  54902183 aaggtccaactgtggtccttctaatatgacctg 54902151  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 19020179 - 19020111
Alignment:
Q  239 atgttttcattagattatttcttaacatgataaaaattattatcttctcaaccaaattattttcacacttt 309  Q
    ||||||| |||||||||| ||||||||| ||||||| ||| ||||||  || ||||||||||||| |||||    
T  19020179 atgtttttattagattatgtcttaacataataaaaactatcatcttc--aaacaaattattttcaaacttt 19020111  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 10872850 - 10872785
Alignment:
Q  242 ttttcattagattatttcttaacatgataaaaattattatcttctcaaccaaattattttcacacttt 309  Q
    |||| |||||||||||||||||| ||||||||| ||| |  || ||||  ||||||||||||||||||    
T  10872850 tttttattagattatttcttaacttgataaaaagtatca--ttttcaagtaaattattttcacacttt 10872785  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 540466 - 540434
Alignment:
Q  369 aaggtccaactgtggtccttctaatatgacctg 401  Q
    |||||||| ||||||||||||||||||||||||    
T  540466 aaggtccagctgtggtccttctaatatgacctg 540434  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 42147539 - 42147606
Alignment:
Q  237 tgatgttttcattagattatttcttaacatgataaaaattattatcttctcaaccaaattattttcaca 305  Q
    ||||||||| |||| ||||||||||||||| ||||||||| | ||||| ||||   |||||||||||||    
T  42147539 tgatgtttttattatattatttcttaacataataaaaattgtcatctt-tcaagttaattattttcaca 42147606  T

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