View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_26 (Length: 400)
Name: NF20116_low_26
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 55695736 - 55695428
Alignment:
| Q |
20 |
tttatttcataaaacccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgggtaaattatgatagagt |
119 |
Q |
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| T |
55695736 |
tttatttcataaaatccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgagtaaattatgatagagt |
55695637 |
T |
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| Q |
120 |
ttcggcnnnnnnnnnnnnnnnnntataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataa |
219 |
Q |
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| T |
55695636 |
tttggcaaaataaaaaagtaaaatataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataa |
55695537 |
T |
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| Q |
220 |
atccgtaaagccatacccatagacttaccttcacaataagatcaatgacaaaagaaaccaaacaaataaagcggaaaagcttctcatcaactttgacatg |
319 |
Q |
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| T |
55695536 |
atccgtaaagccatacccatag---taccttcacaataagatcaatgacaaaagaagccaaacaaataaagcagaaaagcttctcatcaactttgacatg |
55695440 |
T |
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| Q |
320 |
tgaaaaaagtag |
331 |
Q |
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|||||||||||| |
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| T |
55695439 |
tgaaaaaagtag |
55695428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 55695419 - 55695385
Alignment:
| Q |
351 |
tagactcctttctgatcactttttatgcttctgtg |
385 |
Q |
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| T |
55695419 |
tagactcctttctgatcactttttatgcttctgtg |
55695385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 35804198 - 35804319
Alignment:
| Q |
208 |
atataataataaatccgtaaagccatacccatagacttaccttcacaataagatcaatgacaaaa---gaaaccaaacaaataaagcggaaaagcttctc |
304 |
Q |
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| T |
35804198 |
atataataataattctgtaaagccatacccaaagacttaccttcaaaataagatcaatgaaaaaaaacaaaaccaaacaaataaaatagaaaagcttctc |
35804297 |
T |
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| Q |
305 |
atcaactttgacatgtgaaaaa |
326 |
Q |
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| T |
35804298 |
atcaactttgacttgtgaaaaa |
35804319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 35803963 - 35804064
Alignment:
| Q |
20 |
tttatttcataaaacccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgggtaaattatgatagagt |
119 |
Q |
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|||||||| ||||| |||||| ||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| | |
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| T |
35803963 |
tttatttcttaaaatccctttacaaaagtttgttttctaattttcttgtggtgcactcctccc-tctttctgaaatcctttgggtaaattatgatagact |
35804061 |
T |
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| Q |
120 |
ttc |
122 |
Q |
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||| |
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| T |
35804062 |
ttc |
35804064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35804087 - 35804127
Alignment:
| Q |
143 |
tataatttattcaaaccaggagaaatacataatgaccaaac |
183 |
Q |
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| T |
35804087 |
tataatttattcaaaccagaagaaatacataatgaccaaac |
35804127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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