View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_27 (Length: 397)
Name: NF20116_low_27
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 135 - 388
Target Start/End: Complemental strand, 33197110 - 33196857
Alignment:
| Q |
135 |
tgaggccgcaacatcaatcatttagaatttactaactaacctgtggtcctgttcccatatcaggtgcaggaacatccatgtgagttccaattagatcatg |
234 |
Q |
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| T |
33197110 |
tgaggccgcaacatcaatcatttagaatttactaactaacctgtggtcctgttcccatatcaggtgcaggaacatccatgtgagttccaattagatcatg |
33197011 |
T |
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| Q |
235 |
aattttctgagtaaaaactctggtaagtctttctaactcggatatacttaattctgaggggttacaccctatccctcctttggcaccaccatatggtata |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33197010 |
aattttctgagtaaaaactctggtaagtctttctaactcggatatacttaattctgaggggttacaccctatccctcctttggcaccaccatatggtata |
33196911 |
T |
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| Q |
335 |
ttagctacagctgttttccatgtcattagttgcgctaaagcattcacttcatct |
388 |
Q |
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| T |
33196910 |
tttgctacagctgttttccatgtcattagttgcgctaaagcattcacttcatct |
33196857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 33197175 - 33197108
Alignment:
| Q |
17 |
cattcatatcaaacagtaagataacgttgaattcaaaaaatcatgttaatccatatttacatcaatga |
84 |
Q |
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| T |
33197175 |
cattcatatcaaacagtaagataacattgaattcaaaaaatcatgttaatccatatttacatcaatga |
33197108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 169 - 388
Target Start/End: Complemental strand, 10151122 - 10150903
Alignment:
| Q |
169 |
actaacctgtggtcctgttcccatatcaggtgcaggaacatccatgtgagttccaattagatcatgaattttctgagtaaaaactctggtaagtctttct |
268 |
Q |
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| T |
10151122 |
actaacctgtggtcctgttcccatatcaggtgcaggcacatcagtatgaactccaataagatcatgaatcttctgagtaaaaactctagtaagcctttct |
10151023 |
T |
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| Q |
269 |
aactcggatatacttaattctgaggggttacaccctatccctcctttggcaccaccatatggtatattagctacagctgttttccatgtcattagttgcg |
368 |
Q |
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||||| || |||||| ||||| |||| | |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| | |
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| T |
10151022 |
aactcagaagcacttaactctgaagggtcaacccctatccctcctttggcaccaccatatggtaaatttgctactgctgttttccatgtcattagttgtg |
10150923 |
T |
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| Q |
369 |
ctaaagcattcacttcatct |
388 |
Q |
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|||| ||||||||||||||| |
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| T |
10150922 |
ctaatgcattcacttcatct |
10150903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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