View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20116_low_28 (Length: 396)
Name: NF20116_low_28
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 36472236 - 36471878
Alignment:
| Q |
15 |
tcttggtggaggatttatcttagggccacttttcattggacttggaatccctcctcaggtaccttaattctatccttttctttaccataaaatctatatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36472236 |
tcttggtggaggatttatcttagggccacttttcattggacttggaatccctcctcaggtaccttaattctatccttttctttaccataaaatctatatt |
36472137 |
T |
|
| Q |
115 |
tagatgtattttttaactactaaagagatttatgttactatgttcgtatatatgtttgtgttttgattggggaattttctattaaggtggcaagtgctac |
214 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36472136 |
tagatgtatttttgaactaataaagagatttatgttactatgttcgtatatatgtttgtgttttgattggggaattttctattaaggtggcaagtgctac |
36472037 |
T |
|
| Q |
215 |
atccacttttgcaatgacattttctgcatctatgtctgtggtagaatattaccttctgaaacgttttccaattccatatggtaagtgcatggataatttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36472036 |
atccacttttgcaatgacattttctgcatctatgtctgtggtggaatattaccttctgaaacgttttccaattccatatggtaagtgcatggataa---- |
36471941 |
T |
|
| Q |
315 |
aatatttgaannnnnnnnnctctaaaacatttaatattcaacgtttgattattcttgcagctcttt |
380 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36471940 |
---atttgaatttttttttctctaaaacatttaatattcaacgtttgattattcttgcagctcttt |
36471878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 36462934 - 36462797
Alignment:
| Q |
187 |
aattttctattaaggtggcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtggtagaatattaccttctgaaacgttttccaat |
286 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
36462934 |
aattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtggtggaatattaccttctgaaacgttttcccat |
36462835 |
T |
|
| Q |
287 |
tccatatggtaagtgcatggataattttaatatttgaa |
324 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
36462834 |
tccatatggtaagtgtatggataaatttaatatttgaa |
36462797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 36463086 - 36463026
Alignment:
| Q |
15 |
tcttggtggaggatttatcttagggccacttttcattggacttggaatccctcctcaggta |
75 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
36463086 |
tcttggtggaggatttatcttagcgccactcttccttggacttggaatccctcctcaggta |
36463026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 36462688 - 36462651
Alignment:
| Q |
343 |
atttaatattcaacgtttgattattcttgcagctcttt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36462688 |
atttaatattcaacgtttgattattcttgcagctcttt |
36462651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 50750005 - 50750102
Alignment:
| Q |
199 |
aggtggcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtggtagaatattaccttctgaaacgttttccaattccatatggt |
296 |
Q |
| |
|
||||| |||| || ||| ||||||||||||||||||| || | ||||||||||| || ||||| ||| | |||||||| |||||| |||| |||||| |
|
|
| T |
50750005 |
aggtgtcaagcgccacagccacttttgcaatgacattctcctcgtctatgtctgttgtggaatactacttgctgaaacgatttccagttccttatggt |
50750102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 50812788 - 50812709
Alignment:
| Q |
217 |
ccacttttgcaatgacattttctgcatctatgtctgtggtagaatattaccttctgaaacgttttccaattccatatggt |
296 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| |||||||| || | |||||||| ||||| ||||| |||||| |
|
|
| T |
50812788 |
ccacttttgcaatgacattctcctcgtctatgtctgttgtagaatactatttgctgaaacgatttccgattccttatggt |
50812709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 50863076 - 50863155
Alignment:
| Q |
217 |
ccacttttgcaatgacattttctgcatctatgtctgtggtagaatattaccttctgaaacgttttccaattccatatggt |
296 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| |||||||| || | |||||||| ||||| ||||| |||||| |
|
|
| T |
50863076 |
ccacttttgcaatgacattctcctcgtctatgtctgttgtagaatactatttgctgaaacgatttccgattccttatggt |
50863155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University