View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_29 (Length: 390)
Name: NF20116_low_29
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 42862257 - 42862618
Alignment:
| Q |
18 |
atatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttctttccaaaatcagtttaatttaatcatttacat |
117 |
Q |
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| T |
42862257 |
atatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttctttccaaaatcagtttaatttaatcacttacat |
42862356 |
T |
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| Q |
118 |
taacttagatttcataagaacaatttgtaattctattgcattttaggttgtgttcccttttgttgaacaagtgttccttctttccttgtttacaatgaac |
217 |
Q |
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| T |
42862357 |
taacttagatttcataagaacaatttgtaattctattgcattttaggttgtgttcccttttgttgaacaagtattccttctttccttgtttacaatgaac |
42862456 |
T |
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| Q |
218 |
tactataacggttattgacagtcgctggttactttcggtctacttttaacttggccggtattgatgattaatgtgcctcgtcatggtatgaatatgattc |
317 |
Q |
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| T |
42862457 |
tactttaacggttattgacagtcgctggttactttcggtctacttttaacttggccggtattgatgattaatgtgcctcgtcatggtatgaatatgattc |
42862556 |
T |
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| Q |
318 |
ataaacaccatgctttgctcttttacccttcacaacaaatatcttactccctctgttttctt |
379 |
Q |
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| T |
42862557 |
ataaacaccatgctttgctcttttacccttcacaacaaatatcttactccctctgttttctt |
42862618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 27575061 - 27575170
Alignment:
| Q |
37 |
aagaaagcctctctagctgaacattgggcctatgttcaagcttgtttctttccaaaatcagtttaatttaatcatttacattaacttagatttcataaga |
136 |
Q |
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| T |
27575061 |
aagaaagcctctttagctgaagattgggccaacattcaagcttgtttcctttcaaaatctatataatttaaccctttaaattaacttagattttatcaga |
27575160 |
T |
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| Q |
137 |
acaatttgta |
146 |
Q |
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| T |
27575161 |
acaatttgta |
27575170 |
T |
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