View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_32 (Length: 371)
Name: NF20116_low_32
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 15733217 - 15733566
Alignment:
| Q |
1 |
gaaagaaaatacatagaaagagaaaataataagtagagacatcgatcacatgt-tgacaagcatcaatccctgatatgtagatgttcaattattagtacc |
99 |
Q |
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| T |
15733217 |
gaaagaaaatacatagaaagagaaaataa---gtagagacatcgatcacatgtatgacaagcatcaatccctgatatgtagatattcaattattagtacc |
15733313 |
T |
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| Q |
100 |
atggtcgannnnnnnactgacatcgtcgaacactgtatagtgaggagggtcacgaaatggaattataatcaaacttcttatcactgaactgaactttgct |
199 |
Q |
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| T |
15733314 |
atggtcgatttttttactgacatcgtcgaatactgtatagtgaggagggtcacgaaatggaattataatcaaacttcttatcactgaactgaactttgct |
15733413 |
T |
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| Q |
200 |
ttctccagttttgtggccgcatctgcgaatccacaaattgcttgtatgaatgtaaaataaagagccaaaagagcacctaatgtagaaagtcccacagccc |
299 |
Q |
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| T |
15733414 |
ttctccagttttgtggccgcatctgcgaaaccacaaattgcttgtatgaatgtaaaataaagtgccaaaagagcacctaatgtagaaagtcccacagccc |
15733513 |
T |
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| Q |
300 |
agcttgttaaatagttatgaacaagcgaagctctgaatctcgcacgccaacaa |
352 |
Q |
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| T |
15733514 |
aacttgttaaatagttatgaacaagcgaagctctgaatctcgcacgccaacaa |
15733566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 15727434 - 15727547
Alignment:
| Q |
239 |
gcttgtatgaatgtaaaataaagagccaaaagagcacctaatgtagaaagtcccacagcccagcttgttaaatagttatgaacaagcgaagctctgaatc |
338 |
Q |
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| T |
15727434 |
gcttgtatgaatgtaaaataaagagccaaaagagcacctattgtagaaagtcccacagcccaacttgttaaatagttatgaacaagcgaagctctgaatc |
15727533 |
T |
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| Q |
339 |
tcgcacgccaacaa |
352 |
Q |
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| T |
15727534 |
tcgcacgccaacaa |
15727547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 18056832 - 18056916
Alignment:
| Q |
231 |
cacaaattgcttgtatgaatgtaaaataaagagccaaaagagcacctaatgtagaaagtcccacagcccagcttgttaaatagtt |
315 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||| || || || |||||||||||||||||||| ||||||||||| |
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| T |
18056832 |
cacaaattgcttgtatgaatgtaaagtaaagagccaaaaaagccccaaaggttgaaagtcccacagcccagctagttaaatagtt |
18056916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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