View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20116_low_33 (Length: 369)
Name: NF20116_low_33
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 35341551 - 35341211
Alignment:
| Q |
13 |
catcatcacgtcattattgttgtggataatcctctgaatcaagggaattcataaattgaatgtctaaagattttgagttaagttgtagtgtccaacaaat |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
35341551 |
catcatcacgtcattattgtgttggataatcctctgaattgaaagaattcataaattgaatgtctaaaggttttgagttaagttgtagtgtctaacaaag |
35341452 |
T |
|
| Q |
113 |
aatccaaatgtatgtaatattttggttcaaatgtggataatccttcgaatttcactcttgaaccaaaagtttgagagtttttcgcccttaa---cccaaa |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | | |
|
|
| T |
35341451 |
aatccaaatgtatgaaatattttggttcaaatgtggataatcctttgaatttcactcttgacccaaaagtttgagagtttttcgcccttgacttcttgag |
35341352 |
T |
|
| Q |
210 |
agtatagtgttataagaatttataatatccccaaaattgaatatgatccaagcaaaattattactctcgtagccgcgtcattatggcttccaaagaatat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
35341351 |
tgtatagtgttataagaatttataatatccccaaaattcaatatgatccaagcaaaattattactctcgtagccgcgtcat--tggcttgcaaagaatat |
35341254 |
T |
|
| Q |
310 |
catcaaatgacaacatgtcgttccactttctacattcaacact |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341253 |
catcaaatgacaacatgtcgttccactttctacattcaacact |
35341211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 35346867 - 35346778
Alignment:
| Q |
13 |
catcatcacgtcattattgttgtggataatcctctgaatcaagggaattcataaattgaatgtctaaagattttgagttaagttgtagtgtc |
104 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||| || |||||||||||| |||| |
|
|
| T |
35346867 |
catcgtcacgtcattattgttgcggataatcctctgaattgagggaattcataagtcgaatgtctaaaga--ttaagttaagttgtattgtc |
35346778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 35372167 - 35372076
Alignment:
| Q |
232 |
taatatccccaaaa-ttgaatatgatccaagcaaaattattactctcgtagccgcgtcattatggcttccaaagaatatcatcaaatgacaacat |
325 |
Q |
| |
|
||||||||| |||| || || ||||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
35372167 |
taatatcccaaaaagttcaacatgatccaagcaaaattattactctcgccgccgcgtgat--tggcttccaaagaat-tcatcaaatgacaacat |
35372076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 35346641 - 35346594
Alignment:
| Q |
232 |
taatatccccaaaattgaatatgatccaagcaaaattattactctcgt |
279 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35346641 |
taatatcaccaaaattaaatatgatccaagcaaaattattactctcgt |
35346594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 35351887 - 35351719
Alignment:
| Q |
149 |
ataatccttcgaatttcactcttgaaccaaaagtttgagagtttttcgcccttaacccaaaagtatagtgttataagaatttataatatccccaaaattg |
248 |
Q |
| |
|
|||||||| |||| | ||||||||| ||| |||||||||||||||| ||||| | | | |||||||||| ||| || ||||||||| ||||| | |
|
|
| T |
35351887 |
ataatcctccgaactccactcttgacccagaagtttgagagtttttgtcccttga---atatgtatagtgttttaaaaagatataatatctacaaaaata |
35351791 |
T |
|
| Q |
249 |
aa-tatgatccaagcaaaattattactctcgtagccgcgtcattatggcttccaaagaatatcatcaaatgacaacat |
325 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||| |
|
|
| T |
35351790 |
aaatatgatccaagcaaaattattactctcgt-gcatggt-----tggcttccaaagaatatcatgaaatgacaacat |
35351719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University