View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_low_36 (Length: 350)

Name: NF20116_low_36
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_low_36
NF20116_low_36
[»] chr2 (1 HSPs)
chr2 (117-255)||(16645375-16645513)
[»] chr6 (3 HSPs)
chr6 (19-107)||(14248261-14248349)
chr6 (19-107)||(14316796-14316884)
chr6 (22-107)||(14254071-14254153)
[»] scaffold0902 (1 HSPs)
scaffold0902 (19-107)||(3317-3405)
[»] scaffold1652 (1 HSPs)
scaffold1652 (19-107)||(467-552)
[»] scaffold1801 (1 HSPs)
scaffold1801 (19-107)||(132-220)
[»] scaffold1176 (2 HSPs)
scaffold1176 (19-75)||(277-333)
scaffold1176 (56-107)||(1365-1416)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 255
Target Start/End: Complemental strand, 16645513 - 16645375
Alignment:
Q  117 cctgtgccctaggtgtgtgagcactaagaatgatcaaaacaaaaaagatgggacacgtggcagcttccacgttgcagtgcttgacacgtgtacatataaa 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16645513 cctgtgccctaggtgtgtaagcactaagaatgatcaaaacaaaaaagatgaaacacgtggcagcttccacgttgcagtgcttgacacgtgtacatttaaa 16645414  T
Q  217 tggtccatttcaaaaacaacctagggttatatattgatg 255  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16645413 tggtctatttcaaaaacaacctagggttatatattgatg 16645375  T

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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 14248261 - 14248349
Alignment:
Q  19 gggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggaggagatgatggagagttgatggcagacagtgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  14248261 gggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcttgaggaggagatgatggagagttgatggcagacggtgaa 14248349  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 14316796 - 14316884
Alignment:
Q  19 gggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggaggagatgatggagagttgatggcagacagtgaa 107  Q
    ||||||||||||  |||||||| || || ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  14316796 gggtagagatcgatgatggagtgatggccggagtggctgcgggggaagcttgaggaggagatgatggagagttgatggcagacggtgaa 14316884  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 14254071 - 14254153
Alignment:
Q  22 tagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggaggagatgatggagagttgatggcagacagtgaa 107  Q
    ||||||||| |||||||||||| |||||||| ||||| ||  |||| |   ||||||||| ||||||||||||||||||| |||||    
T  14254071 tagagatcgacgatggagtaatagcaggagtagctgcaggtgaagctt---gaggagatggtggagagttgatggcagacggtgaa 14254153  T

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Target: scaffold0902 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 3317 - 3405
Alignment:
Q  19 gggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggaggagatgatggagagttgatggcagacagtgaa 107  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  3317 gggtagagatcgccgatggagtaatggcaggagcggctgctggggaagcatgaggaggagatggtggagagttgatggcagacggtgaa 3405  T

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Target: scaffold1652 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 552 - 467
Alignment:
Q  19 gggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggaggagatgatggagagttgatggcagacagtgaa 107  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||| |   ||||||||| ||||||||||||||||||| |||||    
T  552 gggtagagatcgccgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtggagagttgatggcagacggtgaa 467  T

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Target: scaffold1801 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 220 - 132
Alignment:
Q  19 gggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggaggagatgatggagagttgatggcagacagtgaa 107  Q
    |||||||||||| |||||||||||| |||||||  ||||| ||  |||||||||||||||||  ||||||||||||||||||| |||||    
T  220 gggtagagatcgacgatggagtaatggcaggagcagctgctggcgaagcatgaggaggagattgtggagagttgatggcagacggtgaa 132  T

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Target: scaffold1176 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 333 - 277
Alignment:
Q  19 gggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggag 75  Q
    |||||||||| | |||||||||||| ||||| |||||||||||| |||| |||||||    
T  333 gggtagagatggacgatggagtaatagcaggggtggctgcgggggaagcttgaggag 277  T

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Target: scaffold1176; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 1416 - 1365
Alignment:
Q  56 tgcggggaaagcatgaggaggagatgatggagagttgatggcagacagtgaa 107  Q
    ||||||| |||||||||||||||||| |||| ||||||||||| || |||||    
T  1416 tgcgggggaagcatgaggaggagatggtggacagttgatggcacacggtgaa 1365  T

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