View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_37 (Length: 347)
Name: NF20116_low_37
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 3710141 - 3710472
Alignment:
| Q |
5 |
tcgaagaatatatgagaaatggattcttcaaaaccgcatcacctatgctctgaagcgagccacaaccgactacacctctcctagttatcttttgtagcaa |
104 |
Q |
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| T |
3710141 |
tcgaagaaaatatgagaaatggattcttcaaaactgcatcacctacgctctgaagcgagccacaaccgactacacctctcctagatatcttttgtagcaa |
3710240 |
T |
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| Q |
105 |
ttctattttgaaataatatccaaactaaacacacaacttttgacaaaatcaatttatgtcaagcctttgaccataatagatctgacaagctaactattcc |
204 |
Q |
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| T |
3710241 |
ttctattttgaaataatatccaaactaaacacacaacttttgacaaaatcgatttatgtcaagcctttgaccataatagatctgacaaactaactattcc |
3710340 |
T |
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| Q |
205 |
tgccataagcttcttataagcctaatacaaaattggaatctcctgaacacatatatccaattgagagacatcattccacgaagaa---aagaacttcatc |
301 |
Q |
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| T |
3710341 |
cgccataagcttcttataagcctaatacaaaattggaatctcctgaacacatatatccaattgagagacatcattccacaaagaaaagaagaacttcatc |
3710440 |
T |
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| Q |
302 |
gaccgccttctctaacaacctcatctctcaca |
333 |
Q |
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| T |
3710441 |
gaccaccttctctaacaacctcatctctcaca |
3710472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 7036693 - 7036784
Alignment:
| Q |
87 |
agttatcttttgtagcaattctattttgaaataatatccaaactaaacacacaacttttgacaaaatcaatttatgtcaagcctttgaccat |
178 |
Q |
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| T |
7036693 |
agttatctttggtagctattttattctgaaataatctccaagctaagcacacaacttttaacgggattgatttatgccaagccttcgaccat |
7036784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 36475003 - 36475063
Alignment:
| Q |
106 |
tctattttgaaataatatccaaactaaacacacaacttttgacaaaatcaatttatgtcaa |
166 |
Q |
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|||||||||||||||| ||||||||||| || ||||||| |||||| ||||||||||| |
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| T |
36475003 |
tctattttgaaataatctccaaactaaatacggaacttttaacaaaactgatttatgtcaa |
36475063 |
T |
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