View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_38 (Length: 347)
Name: NF20116_low_38
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 36962879 - 36962548
Alignment:
| Q |
1 |
aatctcaattttcctggggaaaaaatagttagtttgtggagcctttaaaaaccagaaacagtggacagtttaccaagagccacactgcgacctacatcta |
100 |
Q |
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| T |
36962879 |
aatctcaatttttctggggaaaaa-tagttagtttgtggagcctttaaaaaccagaaacagtggacagcttaccaagagccacactgcgacctacatcta |
36962781 |
T |
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| Q |
101 |
tgagaaattaagcaaaatcaactcttgtccaaaacaaacaagatcaagttatttgatcaataacagcttccacaaatccccagccatcatcaacatcagg |
200 |
Q |
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| T |
36962780 |
taagaaattaagcaaaatcaactcttgtccaaaacaaacaagatcaagttatttgatcaataacagcttccacaaatccccagccatcatcaacatcagg |
36962681 |
T |
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| Q |
201 |
gcccacccaataaccagatataactattttagtgtaataatttacattctctttataagagtatgagtcgtgtagaagtcttgccaatgacatgaagcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36962680 |
gcccacccaataaccagatataactattttagtgtaataatttacattccctttataagagtatgagtcgtgtagaagtcttgccaatgacatgaagcaa |
36962581 |
T |
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| Q |
301 |
tggtgacagcttcctcttccttcagagaataat |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36962580 |
tggtgacagcttcctcttccttcagagaataat |
36962548 |
T |
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